Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10510

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
2,807,173	+		ABI39_RS10505	0.17	-2.2
2,807,173	+		ABI39_RS10505	0.17	-2.4
2,807,174	-		ABI39_RS10505	0.17	-3.7
2,807,174	-		ABI39_RS10505	0.17	-6.3
2,807,249	+		ABI39_RS10505	0.23	-2.4
2,807,249	+		ABI39_RS10505	0.23	-3.9
2,807,250	-		ABI39_RS10505	0.23	-4.6
2,807,293	-		ABI39_RS10505	0.27	-4.4
2,807,345	-		ABI39_RS10505	0.31	-2.1
2,807,539	+		ABI39_RS10505	0.48	-3.0
2,807,629	+		ABI39_RS10505	0.55	-1.0
2,807,749	-		ABI39_RS10505	0.65	-4.9
2,807,749	-		ABI39_RS10505	0.65	-5.3
2,807,777	+		ABI39_RS10505	0.68	-3.9
2,807,778	-		ABI39_RS10505	0.68	-4.8
2,807,881	-		ABI39_RS10505	0.76	-3.1
2,808,133	+				-3.2
2,808,136	+				-2.7
2,808,161	-				-4.3
2,808,176	+				+0.3
2,808,226	-		ABI39_RS10510	0.11	-5.1
2,808,262	+		ABI39_RS10510	0.15	-3.9
2,808,279	+		ABI39_RS10510	0.17	-3.6
2,808,415	-		ABI39_RS10510	0.33	-3.8
2,808,590	+		ABI39_RS10510	0.54	-1.7
2,808,613	-		ABI39_RS10510	0.57	-4.3
2,808,686	+		ABI39_RS10510	0.65	-3.8
2,808,686	+		ABI39_RS10510	0.65	-3.8
2,808,785	+		ABI39_RS10510	0.77	-2.3
2,808,786	-		ABI39_RS10510	0.77	-6.1
2,808,827	+		ABI39_RS10510	0.82	-3.0
2,808,828	-		ABI39_RS10510	0.82	-3.6
2,808,891	+		ABI39_RS10510	0.90	-3.2
2,808,940	+				-3.8
2,808,951	+				-5.4
2,808,960	+				-3.5
2,808,961	-				-4.4
2,808,993	-				-0.3
2,809,032	+				-3.9
2,809,035	+				-4.7
2,809,070	+				-3.8
2,809,071	-				-4.5
2,809,129	+				-4.2
2,809,134	+				-4.2
2,809,134	+				-3.7
2,809,287	-		ABI39_RS10515	0.15	+0.9
2,809,311	-		ABI39_RS10515	0.21	-1.2
2,809,377	+		ABI39_RS10515	0.40	-1.8
2,809,379	+		ABI39_RS10515	0.40	-0.2
2,809,462	+		ABI39_RS10515	0.64	-0.9
2,809,515	-		ABI39_RS10515	0.78	-0.4
2,809,687	-				+3.7
2,809,775	-				+1.7
2,809,877	-		ABI39_RS10520	0.18	+0.2
2,809,884	-		ABI39_RS10520	0.19	-1.7
2,809,961	-		ABI39_RS10520	0.34	-0.2