Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07885

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
2,129,078	-		ABI39_RS23030	0.65	+0.1
2,129,112	-		ABI39_RS23030	0.75	-0.3
2,129,125	+		ABI39_RS23030	0.79	-0.5
2,129,146	-		ABI39_RS23030	0.85	+0.3
2,129,147	+		ABI39_RS23030	0.86	+0.6
2,129,148	-		ABI39_RS23030	0.86	+0.7
2,129,177	+				-0.5
2,129,225	-				+0.9
2,129,245	-				+0.1
2,129,300	-				+0.8
2,129,483	+				-0.6
2,129,484	-				-0.1
2,129,496	+				-0.1
2,129,603	+		ABI39_RS07880	0.28	+1.1
2,129,741	-		ABI39_RS07880	0.57	-0.2
2,129,816	+		ABI39_RS07880	0.73	-0.6
2,129,819	-		ABI39_RS07880	0.73	-0.4
2,129,819	-		ABI39_RS07880	0.73	-0.0
2,129,909	+				-0.1
2,129,962	+				+2.0
2,130,089	+				+3.6
2,130,189	-				+6.0
2,130,199	+				+4.5
2,130,200	-				+1.8
2,130,428	+		ABI39_RS07885	0.15	+4.4
2,130,435	-		ABI39_RS07885	0.16	+1.7
2,130,514	+		ABI39_RS07885	0.19	+3.8
2,130,522	-		ABI39_RS07885	0.19	+2.6
2,130,639	+		ABI39_RS07885	0.23	+1.6
2,130,860	-		ABI39_RS07885	0.31	+2.3
2,130,901	+		ABI39_RS07885	0.33	+0.9
2,130,944	+		ABI39_RS07885	0.34	+3.0
2,130,945	-		ABI39_RS07885	0.34	+2.4
2,130,946	+		ABI39_RS07885	0.34	+2.7
2,130,946	+		ABI39_RS07885	0.34	+1.8
2,131,092	+		ABI39_RS07885	0.40	+2.9
2,131,160	-		ABI39_RS07885	0.42	+2.7
2,131,180	+		ABI39_RS07885	0.43	+1.7
2,131,241	+		ABI39_RS07885	0.45	+0.8
2,131,405	+		ABI39_RS07885	0.51	+2.3
2,131,510	+		ABI39_RS07885	0.55	+2.3
2,131,531	+		ABI39_RS07885	0.56	+2.4
2,131,579	-		ABI39_RS07885	0.58	+2.2
2,131,654	-		ABI39_RS07885	0.60	+2.9
2,131,777	+		ABI39_RS07885	0.65	+3.9
2,131,778	-		ABI39_RS07885	0.65	+1.8
2,131,817	-		ABI39_RS07885	0.66	+4.6
2,131,870	+		ABI39_RS07885	0.68	+1.5
2,131,964	+		ABI39_RS07885	0.72	+1.2
2,131,965	-		ABI39_RS07885	0.72	+2.3
2,131,965	-		ABI39_RS07885	0.72	+2.7
2,131,984	+		ABI39_RS07885	0.73	+2.1
2,132,080	+		ABI39_RS07885	0.76	+0.9
2,132,094	+		ABI39_RS07885	0.77	+1.0
2,132,099	-		ABI39_RS07885	0.77	+1.5
2,132,192	+		ABI39_RS07885	0.80	+2.8
2,132,192	+		ABI39_RS07885	0.80	+2.6
2,132,193	-		ABI39_RS07885	0.80	+3.3
2,132,246	-		ABI39_RS07885	0.82	+0.7
2,132,246	-		ABI39_RS07885	0.82	+1.5
2,132,379	+		ABI39_RS07885	0.87	+2.5
2,132,415	-		ABI39_RS07885	0.88	+1.9
2,132,426	-		ABI39_RS07885	0.89	+1.9
2,132,482	+				+1.9
2,132,482	+				+1.2
2,132,567	-				+2.5
2,132,607	-				+2.0
2,132,611	-				+1.7
2,132,611	-				+2.0
2,132,659	+				+1.1
2,132,676	-				+2.3
2,132,722	+				+1.8
2,132,723	-				+2.9
2,132,800	+				+0.9
2,132,842	-				-0.5
2,132,934	-				-0.6
2,132,965	+				+0.4
2,132,966	-				+0.9
2,132,970	+				+0.4
2,133,015	+				-0.0
2,133,179	+				+0.4
2,133,323	+		ABI39_RS07890	0.66	-0.1
2,133,359	-				+1.2
2,133,430	+		ABI39_RS07895	0.13	+0.5
2,133,431	-		ABI39_RS07895	0.13	-0.0
2,133,433	-		ABI39_RS07895	0.14	-0.4
2,133,444	+		ABI39_RS07895	0.16	-0.9
2,133,504	+		ABI39_RS07895	0.26	+1.1
2,133,565	+		ABI39_RS07895	0.37	+0.4
2,133,565	+		ABI39_RS07895	0.37	-0.1
2,133,566	-		ABI39_RS07895	0.37	-0.2
2,133,566	-		ABI39_RS07895	0.37	+0.4
2,133,574	+		ABI39_RS07895	0.39	+0.5
2,133,599	+		ABI39_RS07895	0.43	+0.3
2,133,606	+		ABI39_RS07895	0.44	+1.8
2,133,635	+		ABI39_RS07895	0.49	+0.6
2,133,660	+		ABI39_RS07895	0.54	+1.0