Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02470 and ABI39_RS02475 are separated by 1 nucleotides ABI39_RS02475 and ABI39_RS02480 overlap by 4 nucleotides ABI39_RS02480 and ABI39_RS02485 are separated by 3 nucleotides ABI39_RS02485 and ABI39_RS02490 are separated by 9 nucleotides
ABI39_RS02470: ABI39_RS02470 - ATP-dependent DNA helicase RecG, at 704,764 to 706,860
_RS02470
ABI39_RS02475: ABI39_RS02475 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 706,862 to 707,521
_RS02475
ABI39_RS02480: ABI39_RS02480 - DJ-1/PfpI family protein, at 707,518 to 708,069
_RS02480
ABI39_RS02485: ABI39_RS02485 - TonB family protein, at 708,073 to 708,966
_RS02485
ABI39_RS02490: ABI39_RS02490 - biopolymer transporter ExbD, at 708,976 to 709,395
_RS02490
Position (kb) 707
708
709 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 706.538 kb on + strand, within ABI39_RS02470 at 706.710 kb on - strand at 706.834 kb on + strand at 706.846 kb on - strand at 706.910 kb on - strand at 706.922 kb on - strand at 706.994 kb on - strand, within ABI39_RS02475 at 706.995 kb on + strand, within ABI39_RS02475 at 707.178 kb on - strand, within ABI39_RS02475 at 707.244 kb on + strand, within ABI39_RS02475 at 707.374 kb on + strand, within ABI39_RS02475 at 707.377 kb on + strand, within ABI39_RS02475 at 707.377 kb on + strand, within ABI39_RS02475 at 707.378 kb on - strand, within ABI39_RS02475 at 707.378 kb on - strand, within ABI39_RS02475 at 707.381 kb on + strand, within ABI39_RS02475 at 707.382 kb on - strand, within ABI39_RS02475 at 707.501 kb on + strand at 707.666 kb on + strand, within ABI39_RS02480 at 707.806 kb on + strand, within ABI39_RS02480 at 707.866 kb on + strand, within ABI39_RS02480 at 707.894 kb on - strand, within ABI39_RS02480 at 708.092 kb on + strand at 708.096 kb on + strand at 708.096 kb on + strand at 708.198 kb on + strand, within ABI39_RS02485 at 708.214 kb on - strand, within ABI39_RS02485 at 708.214 kb on - strand, within ABI39_RS02485 at 708.217 kb on - strand, within ABI39_RS02485 at 708.242 kb on - strand, within ABI39_RS02485 at 708.250 kb on - strand, within ABI39_RS02485 at 708.636 kb on + strand, within ABI39_RS02485 at 708.799 kb on - strand, within ABI39_RS02485 at 708.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 706,538 + ABI39_RS02470 0.85 -1.8 706,710 - -1.3 706,834 + -0.7 706,846 - -3.1 706,910 - -1.4 706,922 - +1.9 706,994 - ABI39_RS02475 0.20 +0.3 706,995 + ABI39_RS02475 0.20 -1.3 707,178 - ABI39_RS02475 0.48 +0.3 707,244 + ABI39_RS02475 0.58 -0.3 707,374 + ABI39_RS02475 0.78 -0.1 707,377 + ABI39_RS02475 0.78 -1.7 707,377 + ABI39_RS02475 0.78 -1.1 707,378 - ABI39_RS02475 0.78 +0.3 707,378 - ABI39_RS02475 0.78 -0.0 707,381 + ABI39_RS02475 0.79 -4.1 707,382 - ABI39_RS02475 0.79 -0.8 707,501 + -0.7 707,666 + ABI39_RS02480 0.27 -0.4 707,806 + ABI39_RS02480 0.52 -3.1 707,866 + ABI39_RS02480 0.63 -3.0 707,894 - ABI39_RS02480 0.68 -1.0 708,092 + -0.9 708,096 + +0.2 708,096 + -0.9 708,198 + ABI39_RS02485 0.14 -1.8 708,214 - ABI39_RS02485 0.16 -0.9 708,214 - ABI39_RS02485 0.16 -1.7 708,217 - ABI39_RS02485 0.16 -2.4 708,242 - ABI39_RS02485 0.19 -0.1 708,250 - ABI39_RS02485 0.20 -0.5 708,636 + ABI39_RS02485 0.63 -2.7 708,799 - ABI39_RS02485 0.81 +0.1 708,950 - -0.8
Or see this region's nucleotide sequence