Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02310 and ABI39_RS02315 are separated by 13 nucleotides ABI39_RS02315 and ABI39_RS02320 are separated by 297 nucleotides
ABI39_RS02310: ABI39_RS02310 - peptidylprolyl isomerase, at 671,643 to 672,980
_RS02310
ABI39_RS02315: ABI39_RS02315 - IMP dehydrogenase, at 672,994 to 674,469
_RS02315
ABI39_RS02320: ABI39_RS02320 - DNA helicase RecQ, at 674,767 to 676,947
_RS02320
Position (kb) 672
673
674
675 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 672.035 kb on + strand, within ABI39_RS02310 at 672.090 kb on - strand, within ABI39_RS02310 at 672.186 kb on + strand, within ABI39_RS02310 at 672.277 kb on - strand, within ABI39_RS02310 at 672.331 kb on - strand, within ABI39_RS02310 at 672.375 kb on - strand, within ABI39_RS02310 at 672.398 kb on + strand, within ABI39_RS02310 at 672.398 kb on + strand, within ABI39_RS02310 at 672.417 kb on - strand, within ABI39_RS02310 at 672.634 kb on - strand, within ABI39_RS02310 at 672.657 kb on + strand, within ABI39_RS02310 at 672.782 kb on - strand, within ABI39_RS02310 at 672.797 kb on + strand, within ABI39_RS02310 at 672.816 kb on + strand, within ABI39_RS02310 at 672.897 kb on - strand at 673.010 kb on + strand at 673.010 kb on + strand at 673.010 kb on + strand at 673.010 kb on + strand at 673.010 kb on + strand at 673.015 kb on - strand at 673.026 kb on + strand at 673.109 kb on - strand at 673.109 kb on - strand at 673.109 kb on - strand at 673.163 kb on + strand, within ABI39_RS02315 at 673.189 kb on - strand, within ABI39_RS02315 at 673.421 kb on - strand, within ABI39_RS02315 at 673.496 kb on + strand, within ABI39_RS02315 at 673.496 kb on + strand, within ABI39_RS02315 at 673.496 kb on + strand, within ABI39_RS02315 at 673.497 kb on - strand, within ABI39_RS02315 at 673.497 kb on - strand, within ABI39_RS02315 at 673.551 kb on + strand, within ABI39_RS02315 at 673.632 kb on + strand, within ABI39_RS02315 at 673.858 kb on - strand, within ABI39_RS02315 at 673.868 kb on + strand, within ABI39_RS02315 at 673.876 kb on - strand, within ABI39_RS02315 at 673.876 kb on - strand, within ABI39_RS02315 at 673.903 kb on + strand, within ABI39_RS02315 at 673.927 kb on - strand, within ABI39_RS02315 at 674.003 kb on - strand, within ABI39_RS02315 at 674.014 kb on - strand, within ABI39_RS02315 at 674.174 kb on + strand, within ABI39_RS02315 at 674.205 kb on + strand, within ABI39_RS02315 at 674.206 kb on - strand, within ABI39_RS02315 at 674.233 kb on - strand, within ABI39_RS02315 at 674.416 kb on + strand at 674.417 kb on - strand at 674.469 kb on + strand at 674.469 kb on + strand at 674.470 kb on - strand at 674.590 kb on - strand at 674.590 kb on - strand at 674.590 kb on - strand at 674.645 kb on + strand at 674.676 kb on + strand at 674.677 kb on - strand at 674.677 kb on - strand at 674.678 kb on + strand at 674.696 kb on + strand at 674.793 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 672,035 + ABI39_RS02310 0.29 -1.2 672,090 - ABI39_RS02310 0.33 +0.0 672,186 + ABI39_RS02310 0.41 -0.5 672,277 - ABI39_RS02310 0.47 -0.5 672,331 - ABI39_RS02310 0.51 +0.5 672,375 - ABI39_RS02310 0.55 +2.1 672,398 + ABI39_RS02310 0.56 -0.5 672,398 + ABI39_RS02310 0.56 -0.6 672,417 - ABI39_RS02310 0.58 +2.5 672,634 - ABI39_RS02310 0.74 -0.5 672,657 + ABI39_RS02310 0.76 -1.9 672,782 - ABI39_RS02310 0.85 +0.3 672,797 + ABI39_RS02310 0.86 -0.3 672,816 + ABI39_RS02310 0.88 -0.4 672,897 - +0.4 673,010 + +0.3 673,010 + -0.4 673,010 + -0.2 673,010 + -0.6 673,010 + -0.9 673,015 - -0.9 673,026 + -0.4 673,109 - -3.8 673,109 - -4.0 673,109 - -4.8 673,163 + ABI39_RS02315 0.11 -3.6 673,189 - ABI39_RS02315 0.13 -2.8 673,421 - ABI39_RS02315 0.29 -3.7 673,496 + ABI39_RS02315 0.34 -2.6 673,496 + ABI39_RS02315 0.34 -2.0 673,496 + ABI39_RS02315 0.34 -2.9 673,497 - ABI39_RS02315 0.34 -3.2 673,497 - ABI39_RS02315 0.34 -3.9 673,551 + ABI39_RS02315 0.38 -2.8 673,632 + ABI39_RS02315 0.43 -2.3 673,858 - ABI39_RS02315 0.59 -4.0 673,868 + ABI39_RS02315 0.59 -4.2 673,876 - ABI39_RS02315 0.60 -4.7 673,876 - ABI39_RS02315 0.60 -2.6 673,903 + ABI39_RS02315 0.62 -3.6 673,927 - ABI39_RS02315 0.63 -2.7 674,003 - ABI39_RS02315 0.68 -3.1 674,014 - ABI39_RS02315 0.69 -4.4 674,174 + ABI39_RS02315 0.80 -3.0 674,205 + ABI39_RS02315 0.82 -4.8 674,206 - ABI39_RS02315 0.82 -4.3 674,233 - ABI39_RS02315 0.84 -0.1 674,416 + -3.8 674,417 - -3.4 674,469 + -1.8 674,469 + -2.9 674,470 - -4.3 674,590 - +1.3 674,590 - +0.1 674,590 - +0.3 674,645 + -0.3 674,676 + -0.7 674,677 - -0.8 674,677 - -1.0 674,678 + +0.3 674,696 + +0.0 674,793 + +1.5
Or see this region's nucleotide sequence