Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01980 and ABI39_RS01985 are separated by 25 nucleotides ABI39_RS01985 and ABI39_RS01990 overlap by 11 nucleotides ABI39_RS01990 and ABI39_RS01995 are separated by 342 nucleotides
ABI39_RS01980: ABI39_RS01980 - glycerol kinase GlpK, at 580,370 to 581,866
_RS01980
ABI39_RS01985: ABI39_RS01985 - transketolase, at 581,892 to 582,830
_RS01985
ABI39_RS01990: ABI39_RS01990 - transketolase, at 582,820 to 583,665
_RS01990
ABI39_RS01995: ABI39_RS01995 - DeoR/GlpR transcriptional regulator, at 584,008 to 584,763
_RS01995
Position (kb) 582
583
584 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 581.848 kb on + strand at 581.853 kb on - strand at 581.859 kb on + strand at 581.867 kb on - strand at 581.872 kb on + strand at 581.873 kb on - strand at 582.008 kb on + strand, within ABI39_RS01985 at 582.008 kb on + strand, within ABI39_RS01985 at 582.008 kb on + strand, within ABI39_RS01985 at 582.009 kb on - strand, within ABI39_RS01985 at 582.093 kb on - strand, within ABI39_RS01985 at 582.126 kb on - strand, within ABI39_RS01985 at 582.159 kb on - strand, within ABI39_RS01985 at 582.221 kb on - strand, within ABI39_RS01985 at 582.272 kb on + strand, within ABI39_RS01985 at 582.314 kb on - strand, within ABI39_RS01985 at 582.346 kb on - strand, within ABI39_RS01985 at 582.346 kb on - strand, within ABI39_RS01985 at 582.350 kb on - strand, within ABI39_RS01985 at 582.423 kb on - strand, within ABI39_RS01985 at 582.445 kb on - strand, within ABI39_RS01985 at 582.467 kb on + strand, within ABI39_RS01985 at 582.678 kb on + strand, within ABI39_RS01985 at 582.788 kb on + strand at 582.813 kb on + strand at 582.819 kb on - strand at 582.936 kb on + strand, within ABI39_RS01990 at 582.944 kb on - strand, within ABI39_RS01990 at 583.093 kb on - strand, within ABI39_RS01990 at 583.301 kb on - strand, within ABI39_RS01990 at 583.333 kb on + strand, within ABI39_RS01990 at 583.393 kb on + strand, within ABI39_RS01990 at 583.441 kb on - strand, within ABI39_RS01990 at 583.446 kb on - strand, within ABI39_RS01990 at 583.446 kb on - strand, within ABI39_RS01990 at 583.529 kb on - strand, within ABI39_RS01990 at 583.600 kb on - strand at 583.789 kb on - strand at 583.828 kb on + strand at 583.829 kb on - strand at 583.834 kb on + strand at 583.835 kb on - strand at 583.843 kb on - strand at 583.886 kb on - strand at 584.061 kb on + strand at 584.128 kb on + strand, within ABI39_RS01995 at 584.204 kb on - strand, within ABI39_RS01995 at 584.423 kb on + strand, within ABI39_RS01995
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 581,848 + +0.6 581,853 - +0.3 581,859 + +1.3 581,867 - +0.3 581,872 + +0.5 581,873 - +0.7 582,008 + ABI39_RS01985 0.12 +0.3 582,008 + ABI39_RS01985 0.12 -1.0 582,008 + ABI39_RS01985 0.12 +0.7 582,009 - ABI39_RS01985 0.12 -3.4 582,093 - ABI39_RS01985 0.21 -3.6 582,126 - ABI39_RS01985 0.25 -2.7 582,159 - ABI39_RS01985 0.28 -3.6 582,221 - ABI39_RS01985 0.35 +0.3 582,272 + ABI39_RS01985 0.40 -0.1 582,314 - ABI39_RS01985 0.45 -3.5 582,346 - ABI39_RS01985 0.48 -2.6 582,346 - ABI39_RS01985 0.48 -4.7 582,350 - ABI39_RS01985 0.49 -3.1 582,423 - ABI39_RS01985 0.57 -2.6 582,445 - ABI39_RS01985 0.59 -3.4 582,467 + ABI39_RS01985 0.61 +0.5 582,678 + ABI39_RS01985 0.84 -0.2 582,788 + -0.0 582,813 + -0.5 582,819 - -4.8 582,936 + ABI39_RS01990 0.14 -0.1 582,944 - ABI39_RS01990 0.15 -3.3 583,093 - ABI39_RS01990 0.32 -3.8 583,301 - ABI39_RS01990 0.57 -1.3 583,333 + ABI39_RS01990 0.61 -0.2 583,393 + ABI39_RS01990 0.68 +0.2 583,441 - ABI39_RS01990 0.73 -3.1 583,446 - ABI39_RS01990 0.74 -4.5 583,446 - ABI39_RS01990 0.74 -2.8 583,529 - ABI39_RS01990 0.84 -3.7 583,600 - -3.6 583,789 - -3.1 583,828 + +0.8 583,829 - -1.3 583,834 + +0.1 583,835 - -2.8 583,843 - -3.3 583,886 - -1.2 584,061 + -0.7 584,128 + ABI39_RS01995 0.16 -1.4 584,204 - ABI39_RS01995 0.26 -2.2 584,423 + ABI39_RS01995 0.55 -2.6
Or see this region's nucleotide sequence