Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01400 and ABI39_RS01405 are separated by 10 nucleotides ABI39_RS01405 and ABI39_RS01410 are separated by 121 nucleotides ABI39_RS01410 and ABI39_RS01415 are separated by 17 nucleotides
ABI39_RS01400: ABI39_RS01400 - Mrp/NBP35 family ATP-binding protein, at 427,630 to 428,730
_RS01400
ABI39_RS01405: ABI39_RS01405 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 428,741 to 429,499
_RS01405
ABI39_RS01410: ABI39_RS01410 - DUF975 family protein, at 429,621 to 430,247
_RS01410
ABI39_RS01415: ABI39_RS01415 - branched-chain amino acid aminotransferase, at 430,265 to 431,284
_RS01415
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 428.959 kb on + strand, within ABI39_RS01405 at 429.257 kb on - strand, within ABI39_RS01405 at 429.257 kb on - strand, within ABI39_RS01405 at 429.270 kb on - strand, within ABI39_RS01405 at 429.276 kb on - strand, within ABI39_RS01405 at 429.304 kb on + strand, within ABI39_RS01405 at 429.304 kb on + strand, within ABI39_RS01405 at 429.617 kb on + strand at 429.622 kb on + strand at 429.696 kb on + strand, within ABI39_RS01410 at 429.696 kb on + strand, within ABI39_RS01410 at 429.697 kb on - strand, within ABI39_RS01410 at 429.795 kb on - strand, within ABI39_RS01410 at 429.939 kb on - strand, within ABI39_RS01410 at 429.939 kb on - strand, within ABI39_RS01410 at 429.940 kb on + strand, within ABI39_RS01410 at 429.941 kb on - strand, within ABI39_RS01410 at 430.053 kb on - strand, within ABI39_RS01410 at 430.121 kb on + strand, within ABI39_RS01410 at 430.289 kb on - strand at 430.294 kb on + strand at 430.372 kb on + strand, within ABI39_RS01415 at 430.378 kb on + strand, within ABI39_RS01415
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 428,959 + ABI39_RS01405 0.29 -0.4 429,257 - ABI39_RS01405 0.68 -2.8 429,257 - ABI39_RS01405 0.68 -0.7 429,270 - ABI39_RS01405 0.70 +0.6 429,276 - ABI39_RS01405 0.70 -0.6 429,304 + ABI39_RS01405 0.74 -1.0 429,304 + ABI39_RS01405 0.74 -0.6 429,617 + +1.1 429,622 + +0.5 429,696 + ABI39_RS01410 0.12 -0.1 429,696 + ABI39_RS01410 0.12 -0.7 429,697 - ABI39_RS01410 0.12 -1.1 429,795 - ABI39_RS01410 0.28 -1.5 429,939 - ABI39_RS01410 0.51 -0.7 429,939 - ABI39_RS01410 0.51 -0.9 429,940 + ABI39_RS01410 0.51 -0.8 429,941 - ABI39_RS01410 0.51 -1.5 430,053 - ABI39_RS01410 0.69 +0.5 430,121 + ABI39_RS01410 0.80 -0.4 430,289 - -0.4 430,294 + -1.8 430,372 + ABI39_RS01415 0.10 -0.4 430,378 + ABI39_RS01415 0.11 -1.8
Or see this region's nucleotide sequence