Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00095

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
19,433	-		ABI39_RS00090	0.63	-2.5
19,561	-		ABI39_RS00090	0.71	-0.7
19,730	-		ABI39_RS00090	0.82	-2.1
19,730	-		ABI39_RS00090	0.82	+0.9
19,838	-		ABI39_RS00090	0.89	-1.6
19,936	-				-2.7
19,989	-				-0.9
20,085	-				+0.2
20,255	-				+1.6
20,317	-				+0.4
20,350	+				-1.0
20,366	+				-0.9
20,414	-				-1.3
20,517	+		ABI39_RS00095	0.11	-0.9
20,517	+		ABI39_RS00095	0.11	-2.3
20,517	+		ABI39_RS00095	0.11	-2.8
20,594	+		ABI39_RS00095	0.15	-2.3
20,615	+		ABI39_RS00095	0.16	-1.2
20,688	+		ABI39_RS00095	0.19	+0.9
20,688	+		ABI39_RS00095	0.19	-1.4
20,778	-		ABI39_RS00095	0.23	-1.4
20,778	-		ABI39_RS00095	0.23	-3.0
20,833	-		ABI39_RS00095	0.26	-1.2
21,333	-		ABI39_RS00095	0.49	-0.6
21,371	+		ABI39_RS00095	0.51	-0.8
21,416	+		ABI39_RS00095	0.53	-2.9
21,537	-		ABI39_RS00095	0.58	-2.8
21,585	+		ABI39_RS00095	0.61	-3.3
21,594	-		ABI39_RS00095	0.61	-1.7
21,657	-		ABI39_RS00095	0.64	-1.3
21,687	-		ABI39_RS00095	0.65	-1.7
21,861	-		ABI39_RS00095	0.73	-0.1
21,969	-		ABI39_RS00095	0.78	+0.9
22,000	-		ABI39_RS00095	0.80	-1.5
22,010	-		ABI39_RS00095	0.80	-1.0
22,146	+		ABI39_RS00095	0.87	-2.0
22,210	-		ABI39_RS00095	0.89	-2.5
22,429	-				-1.8
22,443	+				-2.1
22,443	+				-2.0
22,457	+				-2.5
22,570	+				+0.3
22,580	+				+1.2
22,581	-				+0.5
22,644	-				+0.4
22,670	-				-1.9
22,714	+				+0.7
22,714	+				-0.3
22,715	-				-0.5
22,740	-		ABI39_RS00100	0.11	+0.9
22,785	-		ABI39_RS00100	0.15	-0.1
22,786	+		ABI39_RS00100	0.15	+0.5
22,791	-		ABI39_RS00100	0.15	+0.6
22,862	-		ABI39_RS00100	0.21	+0.6
23,076	+		ABI39_RS00100	0.40	-0.8
23,095	+		ABI39_RS00100	0.42	-0.2
23,096	-		ABI39_RS00100	0.42	+1.0
23,096	-		ABI39_RS00100	0.42	+0.9
23,187	+		ABI39_RS00100	0.50	+0.1
23,232	+		ABI39_RS00100	0.54	+1.1
23,258	+		ABI39_RS00100	0.56	+0.3
23,419	+		ABI39_RS00100	0.71	-0.1
23,422	-		ABI39_RS00100	0.71	+0.2