Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00085 and ABI39_RS00090 are separated by 1 nucleotides ABI39_RS00090 and ABI39_RS00095 are separated by 262 nucleotides
ABI39_RS00085: ABI39_RS00085 - response regulator transcription factor, at 17,746 to 18,444
_RS00085
ABI39_RS00090: ABI39_RS00090 - HAMP domain-containing histidine kinase, at 18,446 to 20,014
_RS00090
ABI39_RS00095: ABI39_RS00095 - elongation factor G, at 20,277 to 22,436
_RS00095
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 17.480 kb on + strand at 17.481 kb on - strand at 17.645 kb on - strand at 17.729 kb on - strand at 17.748 kb on - strand at 17.753 kb on - strand at 18.516 kb on - strand at 18.677 kb on - strand, within ABI39_RS00090 at 18.704 kb on - strand, within ABI39_RS00090 at 18.704 kb on - strand, within ABI39_RS00090 at 18.708 kb on - strand, within ABI39_RS00090 at 18.804 kb on - strand, within ABI39_RS00090 at 18.850 kb on - strand, within ABI39_RS00090 at 18.850 kb on - strand, within ABI39_RS00090 at 19.094 kb on - strand, within ABI39_RS00090 at 19.140 kb on - strand, within ABI39_RS00090 at 19.140 kb on - strand, within ABI39_RS00090 at 19.251 kb on - strand, within ABI39_RS00090 at 19.433 kb on - strand, within ABI39_RS00090 at 19.561 kb on - strand, within ABI39_RS00090 at 19.730 kb on - strand, within ABI39_RS00090 at 19.730 kb on - strand, within ABI39_RS00090 at 19.838 kb on - strand, within ABI39_RS00090 at 19.936 kb on - strand at 19.989 kb on - strand at 20.085 kb on - strand at 20.255 kb on - strand at 20.317 kb on - strand at 20.350 kb on + strand at 20.366 kb on + strand at 20.414 kb on - strand at 20.517 kb on + strand, within ABI39_RS00095 at 20.517 kb on + strand, within ABI39_RS00095 at 20.517 kb on + strand, within ABI39_RS00095 at 20.594 kb on + strand, within ABI39_RS00095 at 20.615 kb on + strand, within ABI39_RS00095 at 20.688 kb on + strand, within ABI39_RS00095 at 20.688 kb on + strand, within ABI39_RS00095 at 20.778 kb on - strand, within ABI39_RS00095 at 20.778 kb on - strand, within ABI39_RS00095 at 20.833 kb on - strand, within ABI39_RS00095
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 17,480 + -0.6 17,481 - +0.8 17,645 - -0.8 17,729 - -2.4 17,748 - -1.3 17,753 - -3.4 18,516 - -1.8 18,677 - ABI39_RS00090 0.15 -0.7 18,704 - ABI39_RS00090 0.16 -0.9 18,704 - ABI39_RS00090 0.16 -1.6 18,708 - ABI39_RS00090 0.17 -1.3 18,804 - ABI39_RS00090 0.23 +0.5 18,850 - ABI39_RS00090 0.26 +0.9 18,850 - ABI39_RS00090 0.26 -2.7 19,094 - ABI39_RS00090 0.41 -1.3 19,140 - ABI39_RS00090 0.44 -0.5 19,140 - ABI39_RS00090 0.44 -2.6 19,251 - ABI39_RS00090 0.51 -0.9 19,433 - ABI39_RS00090 0.63 -2.5 19,561 - ABI39_RS00090 0.71 -0.7 19,730 - ABI39_RS00090 0.82 -2.1 19,730 - ABI39_RS00090 0.82 +0.9 19,838 - ABI39_RS00090 0.89 -1.6 19,936 - -2.7 19,989 - -0.9 20,085 - +0.2 20,255 - +1.6 20,317 - +0.4 20,350 + -1.0 20,366 + -0.9 20,414 - -1.3 20,517 + ABI39_RS00095 0.11 -0.9 20,517 + ABI39_RS00095 0.11 -2.3 20,517 + ABI39_RS00095 0.11 -2.8 20,594 + ABI39_RS00095 0.15 -2.3 20,615 + ABI39_RS00095 0.16 -1.2 20,688 + ABI39_RS00095 0.19 +0.9 20,688 + ABI39_RS00095 0.19 -1.4 20,778 - ABI39_RS00095 0.23 -1.4 20,778 - ABI39_RS00095 0.23 -3.0 20,833 - ABI39_RS00095 0.26 -1.2
Or see this region's nucleotide sequence