Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prpB and prpR are separated by 238 nucleotides prpR and yahO are separated by 97 nucleotides yahO and yahN are separated by 185 nucleotides
NOLOHH_01775: prpB - methylisocitrate lyase, at 252,072 to 252,962
prpB
NOLOHH_01780: prpR - propionate catabolism operon regulatory protein PrpR, at 253,201 to 254,787
prpR
NOLOHH_01785: yahO - DUF1471 domain-containing protein, at 254,885 to 255,160
yahO
NOLOHH_01790: yahN - Uncharacterized membrane protein YahN, at 255,346 to 255,978
yahN
Position (kb) 253
254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 252.211 kb on + strand, within prpB at 252.211 kb on + strand, within prpB at 252.211 kb on + strand, within prpB at 252.212 kb on - strand, within prpB at 252.212 kb on - strand, within prpB at 252.212 kb on - strand, within prpB at 252.259 kb on + strand, within prpB at 252.376 kb on + strand, within prpB at 252.376 kb on + strand, within prpB at 252.376 kb on + strand, within prpB at 252.376 kb on + strand, within prpB at 252.433 kb on + strand, within prpB at 252.433 kb on + strand, within prpB at 252.434 kb on - strand, within prpB at 252.434 kb on - strand, within prpB at 252.647 kb on + strand, within prpB at 252.776 kb on + strand, within prpB at 252.776 kb on + strand, within prpB at 252.783 kb on - strand, within prpB at 252.836 kb on - strand, within prpB at 252.917 kb on + strand at 252.955 kb on - strand at 252.962 kb on + strand at 252.962 kb on + strand at 252.963 kb on - strand at 252.963 kb on - strand at 252.963 kb on - strand at 252.963 kb on - strand at 252.963 kb on - strand at 253.184 kb on + strand at 253.318 kb on - strand at 253.354 kb on + strand at 253.449 kb on + strand, within prpR at 253.481 kb on + strand, within prpR at 253.482 kb on - strand, within prpR at 253.534 kb on + strand, within prpR at 253.599 kb on + strand, within prpR at 253.600 kb on - strand, within prpR at 253.600 kb on - strand, within prpR at 253.600 kb on - strand, within prpR at 253.600 kb on - strand, within prpR at 253.600 kb on - strand, within prpR at 253.600 kb on - strand, within prpR at 253.603 kb on + strand, within prpR at 253.603 kb on + strand, within prpR at 253.603 kb on + strand, within prpR at 253.603 kb on + strand, within prpR at 253.603 kb on + strand, within prpR at 253.603 kb on + strand, within prpR at 253.604 kb on - strand, within prpR at 253.604 kb on - strand, within prpR at 253.604 kb on - strand, within prpR at 253.604 kb on - strand, within prpR at 253.604 kb on - strand, within prpR at 253.604 kb on - strand, within prpR at 253.604 kb on - strand, within prpR at 253.604 kb on - strand, within prpR at 253.726 kb on - strand, within prpR at 253.798 kb on - strand, within prpR at 253.852 kb on - strand, within prpR at 253.883 kb on + strand, within prpR at 253.883 kb on + strand, within prpR at 253.883 kb on + strand, within prpR at 253.883 kb on + strand, within prpR at 253.883 kb on + strand, within prpR at 253.884 kb on - strand, within prpR at 253.884 kb on - strand, within prpR at 253.893 kb on + strand, within prpR at 253.893 kb on + strand, within prpR at 253.893 kb on + strand, within prpR at 253.904 kb on - strand, within prpR at 253.987 kb on + strand, within prpR at 253.987 kb on + strand, within prpR at 254.282 kb on + strand, within prpR at 254.283 kb on - strand, within prpR at 254.283 kb on - strand, within prpR at 254.283 kb on - strand, within prpR at 254.322 kb on + strand, within prpR at 254.323 kb on - strand, within prpR at 254.367 kb on + strand, within prpR at 254.524 kb on + strand, within prpR at 254.541 kb on + strand, within prpR at 254.541 kb on + strand, within prpR at 254.610 kb on - strand, within prpR at 254.633 kb on + strand at 254.741 kb on - strand at 254.833 kb on - strand at 254.833 kb on - strand at 254.853 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.874 kb on - strand at 254.902 kb on + strand at 254.923 kb on + strand, within yahO at 254.924 kb on - strand, within yahO at 254.924 kb on - strand, within yahO at 254.924 kb on - strand, within yahO at 254.924 kb on - strand, within yahO at 254.924 kb on - strand, within yahO at 255.035 kb on - strand, within yahO at 255.103 kb on - strand, within yahO at 255.152 kb on + strand at 255.152 kb on + strand at 255.219 kb on + strand at 255.220 kb on - strand at 255.259 kb on + strand at 255.260 kb on - strand at 255.292 kb on - strand at 255.307 kb on - strand at 255.317 kb on + strand at 255.327 kb on - strand at 255.431 kb on + strand, within yahN at 255.539 kb on + strand, within yahN at 255.539 kb on + strand, within yahN at 255.543 kb on + strand, within yahN at 255.544 kb on - strand, within yahN at 255.544 kb on - strand, within yahN at 255.599 kb on + strand, within yahN at 255.599 kb on + strand, within yahN at 255.599 kb on + strand, within yahN at 255.600 kb on - strand, within yahN at 255.600 kb on - strand, within yahN at 255.653 kb on + strand, within yahN at 255.653 kb on + strand, within yahN at 255.654 kb on - strand, within yahN at 255.680 kb on - strand, within yahN at 255.764 kb on + strand, within yahN at 255.764 kb on + strand, within yahN at 255.764 kb on + strand, within yahN at 255.765 kb on - strand, within yahN
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 252,211 + prpB NOLOHH_01775 0.16 -2.0 252,211 + prpB NOLOHH_01775 0.16 -2.5 252,211 + prpB NOLOHH_01775 0.16 -3.4 252,212 - prpB NOLOHH_01775 0.16 -1.2 252,212 - prpB NOLOHH_01775 0.16 -2.0 252,212 - prpB NOLOHH_01775 0.16 +1.2 252,259 + prpB NOLOHH_01775 0.21 -0.2 252,376 + prpB NOLOHH_01775 0.34 +0.4 252,376 + prpB NOLOHH_01775 0.34 +2.1 252,376 + prpB NOLOHH_01775 0.34 +0.8 252,376 + prpB NOLOHH_01775 0.34 -0.3 252,433 + prpB NOLOHH_01775 0.41 -1.8 252,433 + prpB NOLOHH_01775 0.41 -0.1 252,434 - prpB NOLOHH_01775 0.41 +0.5 252,434 - prpB NOLOHH_01775 0.41 -3.1 252,647 + prpB NOLOHH_01775 0.65 -1.4 252,776 + prpB NOLOHH_01775 0.79 -2.6 252,776 + prpB NOLOHH_01775 0.79 +1.1 252,783 - prpB NOLOHH_01775 0.80 +1.4 252,836 - prpB NOLOHH_01775 0.86 -3.1 252,917 + -1.1 252,955 - -2.7 252,962 + -0.3 252,962 + -0.6 252,963 - +1.0 252,963 - +0.4 252,963 - +1.0 252,963 - -1.3 252,963 - +0.1 253,184 + -0.6 253,318 - -3.2 253,354 + +1.6 253,449 + prpR NOLOHH_01780 0.16 +0.5 253,481 + prpR NOLOHH_01780 0.18 -0.4 253,482 - prpR NOLOHH_01780 0.18 +1.2 253,534 + prpR NOLOHH_01780 0.21 +0.4 253,599 + prpR NOLOHH_01780 0.25 +0.5 253,600 - prpR NOLOHH_01780 0.25 +1.3 253,600 - prpR NOLOHH_01780 0.25 -1.1 253,600 - prpR NOLOHH_01780 0.25 -2.4 253,600 - prpR NOLOHH_01780 0.25 -0.2 253,600 - prpR NOLOHH_01780 0.25 +1.3 253,600 - prpR NOLOHH_01780 0.25 +1.7 253,603 + prpR NOLOHH_01780 0.25 -1.1 253,603 + prpR NOLOHH_01780 0.25 -0.9 253,603 + prpR NOLOHH_01780 0.25 -0.4 253,603 + prpR NOLOHH_01780 0.25 +1.4 253,603 + prpR NOLOHH_01780 0.25 +0.7 253,603 + prpR NOLOHH_01780 0.25 -0.8 253,604 - prpR NOLOHH_01780 0.25 -0.2 253,604 - prpR NOLOHH_01780 0.25 -1.4 253,604 - prpR NOLOHH_01780 0.25 +0.7 253,604 - prpR NOLOHH_01780 0.25 +1.0 253,604 - prpR NOLOHH_01780 0.25 +0.7 253,604 - prpR NOLOHH_01780 0.25 +2.9 253,604 - prpR NOLOHH_01780 0.25 -0.9 253,604 - prpR NOLOHH_01780 0.25 +0.0 253,726 - prpR NOLOHH_01780 0.33 +1.2 253,798 - prpR NOLOHH_01780 0.38 -2.6 253,852 - prpR NOLOHH_01780 0.41 -0.3 253,883 + prpR NOLOHH_01780 0.43 +0.8 253,883 + prpR NOLOHH_01780 0.43 +1.0 253,883 + prpR NOLOHH_01780 0.43 -1.6 253,883 + prpR NOLOHH_01780 0.43 -2.1 253,883 + prpR NOLOHH_01780 0.43 -0.4 253,884 - prpR NOLOHH_01780 0.43 +1.0 253,884 - prpR NOLOHH_01780 0.43 -1.4 253,893 + prpR NOLOHH_01780 0.44 +0.8 253,893 + prpR NOLOHH_01780 0.44 +0.6 253,893 + prpR NOLOHH_01780 0.44 -0.1 253,904 - prpR NOLOHH_01780 0.44 +1.0 253,987 + prpR NOLOHH_01780 0.50 +0.7 253,987 + prpR NOLOHH_01780 0.50 +2.3 254,282 + prpR NOLOHH_01780 0.68 -0.1 254,283 - prpR NOLOHH_01780 0.68 +2.3 254,283 - prpR NOLOHH_01780 0.68 -1.9 254,283 - prpR NOLOHH_01780 0.68 +1.7 254,322 + prpR NOLOHH_01780 0.71 +1.2 254,323 - prpR NOLOHH_01780 0.71 -1.0 254,367 + prpR NOLOHH_01780 0.73 +0.5 254,524 + prpR NOLOHH_01780 0.83 +0.4 254,541 + prpR NOLOHH_01780 0.84 -0.6 254,541 + prpR NOLOHH_01780 0.84 +1.9 254,610 - prpR NOLOHH_01780 0.89 +1.4 254,633 + -1.9 254,741 - -3.6 254,833 - -3.1 254,833 - +0.2 254,853 - -2.7 254,870 - +1.1 254,870 - +1.1 254,870 - -1.3 254,870 - +0.5 254,870 - +1.4 254,874 - -1.0 254,902 + -1.7 254,923 + yahO NOLOHH_01785 0.14 -0.7 254,924 - yahO NOLOHH_01785 0.14 -1.3 254,924 - yahO NOLOHH_01785 0.14 +1.2 254,924 - yahO NOLOHH_01785 0.14 -0.3 254,924 - yahO NOLOHH_01785 0.14 -1.5 254,924 - yahO NOLOHH_01785 0.14 +0.3 255,035 - yahO NOLOHH_01785 0.54 -0.9 255,103 - yahO NOLOHH_01785 0.79 -1.6 255,152 + -0.2 255,152 + -2.1 255,219 + +0.3 255,220 - -2.9 255,259 + +0.1 255,260 - +0.7 255,292 - -0.9 255,307 - +0.3 255,317 + -1.5 255,327 - -1.7 255,431 + yahN NOLOHH_01790 0.13 +0.7 255,539 + yahN NOLOHH_01790 0.30 -0.2 255,539 + yahN NOLOHH_01790 0.30 +0.5 255,543 + yahN NOLOHH_01790 0.31 -0.2 255,544 - yahN NOLOHH_01790 0.31 +0.2 255,544 - yahN NOLOHH_01790 0.31 -0.2 255,599 + yahN NOLOHH_01790 0.40 -1.6 255,599 + yahN NOLOHH_01790 0.40 +2.0 255,599 + yahN NOLOHH_01790 0.40 +0.8 255,600 - yahN NOLOHH_01790 0.40 -0.9 255,600 - yahN NOLOHH_01790 0.40 +0.0 255,653 + yahN NOLOHH_01790 0.48 +0.8 255,653 + yahN NOLOHH_01790 0.48 +1.2 255,654 - yahN NOLOHH_01790 0.49 +0.2 255,680 - yahN NOLOHH_01790 0.53 +0.4 255,764 + yahN NOLOHH_01790 0.66 +0.7 255,764 + yahN NOLOHH_01790 0.66 -1.5 255,764 + yahN NOLOHH_01790 0.66 +0.3 255,765 - yahN NOLOHH_01790 0.66 +1.0
Or see this region's nucleotide sequence