Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21360 and ABI39_RS21365 are separated by 90 nucleotides ABI39_RS21365 and ABI39_RS21370 are separated by 53 nucleotides
ABI39_RS21360: ABI39_RS21360 - LPS-assembly protein LptD, at 5,269,152 to 5,271,887
_RS21360
ABI39_RS21365: ABI39_RS21365 - HDIG domain-containing protein, at 5,271,978 to 5,272,514
_RS21365
ABI39_RS21370: ABI39_RS21370 - DUF1343 domain-containing protein, at 5,272,568 to 5,273,728
_RS21370
Position (kb) 5271
5272
5273 Strain fitness (log2 ratio) -2
-1
0
1 at 5271.962 kb on - strand at 5272.194 kb on + strand, within ABI39_RS21365 at 5272.195 kb on - strand, within ABI39_RS21365 at 5272.196 kb on + strand, within ABI39_RS21365 at 5272.208 kb on + strand, within ABI39_RS21365 at 5272.209 kb on - strand, within ABI39_RS21365 at 5272.274 kb on - strand, within ABI39_RS21365 at 5272.288 kb on + strand, within ABI39_RS21365 at 5272.530 kb on + strand at 5272.606 kb on + strand at 5272.668 kb on + strand at 5272.669 kb on - strand at 5272.672 kb on + strand at 5272.675 kb on - strand at 5272.878 kb on - strand, within ABI39_RS21370 at 5272.920 kb on + strand, within ABI39_RS21370 at 5272.921 kb on - strand, within ABI39_RS21370 at 5272.921 kb on - strand, within ABI39_RS21370 at 5272.950 kb on + strand, within ABI39_RS21370 at 5272.951 kb on - strand, within ABI39_RS21370 at 5272.964 kb on + strand, within ABI39_RS21370 at 5272.970 kb on + strand, within ABI39_RS21370 at 5272.988 kb on + strand, within ABI39_RS21370 at 5272.989 kb on - strand, within ABI39_RS21370 at 5272.989 kb on - strand, within ABI39_RS21370 at 5272.990 kb on + strand, within ABI39_RS21370 at 5272.990 kb on + strand, within ABI39_RS21370 at 5272.990 kb on + strand, within ABI39_RS21370 at 5272.993 kb on - strand, within ABI39_RS21370 at 5273.119 kb on + strand, within ABI39_RS21370 at 5273.243 kb on + strand, within ABI39_RS21370 at 5273.299 kb on - strand, within ABI39_RS21370 at 5273.299 kb on - strand, within ABI39_RS21370 at 5273.452 kb on + strand, within ABI39_RS21370
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 5,271,962 - +0.1 5,272,194 + ABI39_RS21365 0.40 -1.0 5,272,195 - ABI39_RS21365 0.40 -1.7 5,272,196 + ABI39_RS21365 0.41 -0.6 5,272,208 + ABI39_RS21365 0.43 -1.2 5,272,209 - ABI39_RS21365 0.43 -0.9 5,272,274 - ABI39_RS21365 0.55 -0.5 5,272,288 + ABI39_RS21365 0.58 -0.0 5,272,530 + -0.7 5,272,606 + +0.8 5,272,668 + +0.1 5,272,669 - +1.4 5,272,672 + +0.5 5,272,675 - -1.3 5,272,878 - ABI39_RS21370 0.27 +0.2 5,272,920 + ABI39_RS21370 0.30 -0.2 5,272,921 - ABI39_RS21370 0.30 +0.3 5,272,921 - ABI39_RS21370 0.30 +1.2 5,272,950 + ABI39_RS21370 0.33 +0.7 5,272,951 - ABI39_RS21370 0.33 +1.0 5,272,964 + ABI39_RS21370 0.34 -0.8 5,272,970 + ABI39_RS21370 0.35 +0.2 5,272,988 + ABI39_RS21370 0.36 -1.9 5,272,989 - ABI39_RS21370 0.36 +1.5 5,272,989 - ABI39_RS21370 0.36 +1.7 5,272,990 + ABI39_RS21370 0.36 -0.8 5,272,990 + ABI39_RS21370 0.36 -1.0 5,272,990 + ABI39_RS21370 0.36 -0.8 5,272,993 - ABI39_RS21370 0.37 +0.2 5,273,119 + ABI39_RS21370 0.47 -0.5 5,273,243 + ABI39_RS21370 0.58 -0.1 5,273,299 - ABI39_RS21370 0.63 +1.3 5,273,299 - ABI39_RS21370 0.63 +0.1 5,273,452 + ABI39_RS21370 0.76 -0.9
Or see this region's nucleotide sequence