Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04115

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
1,169,701	-		ABI39_RS04105	0.89	+0.1
1,169,908	-				+0.2
1,169,974	-				-0.4
1,170,008	-				-0.2
1,170,037	+				+0.3
1,170,086	+				+0.2
1,170,465	+				+0.1
1,170,565	+				+0.8
1,170,567	+				-0.4
1,170,567	+				+0.4
1,170,569	+				+0.3
1,170,635	+				-1.8
1,170,635	+				+0.5
1,171,077	+		ABI39_RS04115	0.38	-0.6
1,171,226	+		ABI39_RS04115	0.52	+0.7
1,171,288	-		ABI39_RS04115	0.58	+0.2
1,171,438	+		ABI39_RS04115	0.72	-0.7
1,171,615	+		ABI39_RS04115	0.89	-0.9
1,171,771	+				-0.4
1,171,791	+		ABI39_RS04120	0.17	+0.3
1,171,825	-		ABI39_RS04120	0.28	+1.2
1,171,825	-		ABI39_RS04120	0.28	-0.7
1,171,880	-		ABI39_RS04120	0.48	-2.6
1,171,961	+		ABI39_RS04120	0.76	+0.4
1,171,962	-		ABI39_RS04120	0.76	-0.9
1,172,045	+				-0.5
1,172,045	+				+0.5
1,172,328	+		ABI39_RS04125	0.19	+0.1
1,172,356	-		ABI39_RS04125	0.22	+0.0
1,172,356	-		ABI39_RS04125	0.22	+0.4
1,172,361	-		ABI39_RS04125	0.23	+0.7
1,172,379	+		ABI39_RS04125	0.25	-0.7
1,172,448	+		ABI39_RS04125	0.32	-0.3
1,172,451	+		ABI39_RS04125	0.33	-1.2
1,172,452	-		ABI39_RS04125	0.33	-0.5
1,172,585	-		ABI39_RS04125	0.47	-1.0
1,172,619	-		ABI39_RS04125	0.51	+0.4