Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00740 and ABI39_RS00745 are separated by 154 nucleotides ABI39_RS00745 and ABI39_RS00750 are separated by 61 nucleotides ABI39_RS00750 and ABI39_RS00755 are separated by 203 nucleotides ABI39_RS00755 and ABI39_RS00760 are separated by 83 nucleotides
ABI39_RS00740: ABI39_RS00740 - helix-turn-helix domain-containing protein, at 228,236 to 231,058
_RS00740
ABI39_RS00745: ABI39_RS00745 - tRNA-Met, at 231,213 to 231,286
_RS00745
ABI39_RS00750: ABI39_RS00750 - tRNA-Met, at 231,348 to 231,421
_RS00750
ABI39_RS00755: ABI39_RS00755 - hypothetical protein, at 231,625 to 232,011
_RS00755
ABI39_RS00760: ABI39_RS00760 - YjgP/YjgQ family permease, at 232,095 to 233,993
_RS00760
Position (kb) 231
232
233 Strain fitness (log2 ratio) -1
0
1 at 230.866 kb on + strand at 230.930 kb on - strand at 230.930 kb on - strand at 230.932 kb on + strand at 230.933 kb on - strand at 231.010 kb on - strand at 231.012 kb on - strand at 231.016 kb on + strand at 231.016 kb on + strand at 231.021 kb on - strand at 231.026 kb on + strand at 231.043 kb on - strand at 231.146 kb on - strand at 231.195 kb on + strand at 231.195 kb on + strand at 231.266 kb on - strand, within ABI39_RS00745 at 231.337 kb on - strand at 231.509 kb on + strand at 231.530 kb on - strand at 231.653 kb on - strand at 231.683 kb on + strand, within ABI39_RS00755 at 231.683 kb on + strand, within ABI39_RS00755 at 231.683 kb on + strand, within ABI39_RS00755 at 231.684 kb on - strand, within ABI39_RS00755 at 231.693 kb on + strand, within ABI39_RS00755 at 231.755 kb on + strand, within ABI39_RS00755 at 231.756 kb on - strand, within ABI39_RS00755 at 231.826 kb on - strand, within ABI39_RS00755 at 231.887 kb on - strand, within ABI39_RS00755 at 231.909 kb on + strand, within ABI39_RS00755 at 231.909 kb on + strand, within ABI39_RS00755 at 231.910 kb on - strand, within ABI39_RS00755 at 232.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 230,866 + -0.2 230,930 - +0.1 230,930 - +0.0 230,932 + +0.2 230,933 - +0.6 231,010 - -1.1 231,012 - -0.4 231,016 + +0.6 231,016 + +0.7 231,021 - +0.4 231,026 + -1.0 231,043 - -0.5 231,146 - +0.4 231,195 + -0.9 231,195 + +0.8 231,266 - ABI39_RS00745 0.72 +0.9 231,337 - -0.2 231,509 + -0.1 231,530 - -0.9 231,653 - +0.6 231,683 + ABI39_RS00755 0.15 -0.3 231,683 + ABI39_RS00755 0.15 -0.2 231,683 + ABI39_RS00755 0.15 +0.1 231,684 - ABI39_RS00755 0.15 -0.7 231,693 + ABI39_RS00755 0.18 -0.6 231,755 + ABI39_RS00755 0.34 +0.0 231,756 - ABI39_RS00755 0.34 +0.8 231,826 - ABI39_RS00755 0.52 -0.2 231,887 - ABI39_RS00755 0.68 +0.3 231,909 + ABI39_RS00755 0.73 +0.3 231,909 + ABI39_RS00755 0.73 +0.0 231,910 - ABI39_RS00755 0.74 +1.1 232,009 + +0.3
Or see this region's nucleotide sequence