Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18105

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
4,568,302	+				+0.4
4,568,302	+				+1.3
4,568,347	+				-2.3
4,568,352	-				-2.2
4,568,418	-				-2.5
4,568,456	+				-0.8
4,568,456	+				-2.7
4,568,562	-				-1.4
4,568,583	-				-0.4
4,568,584	+				+0.5
4,568,607	+				+0.6
4,568,834	+				-0.4
4,568,835	-				+1.2
4,568,926	+				+0.1
4,568,926	+				-0.9
4,568,926	+				-0.3
4,568,927	-				-0.9
4,568,927	-				-0.6
4,568,928	-				+1.2
4,568,929	+				-0.0
4,568,995	-				-1.0
4,568,997	+				-0.2
4,569,057	+				-1.4
4,569,280	+				-0.4
4,569,311	-		ABI39_RS18105	0.12	+1.2
4,569,377	+		ABI39_RS18105	0.27	-0.3
4,569,411	-		ABI39_RS18105	0.35	-0.4
4,569,446	-		ABI39_RS18105	0.43	-1.9
4,569,446	-		ABI39_RS18105	0.43	-0.3
4,569,446	-		ABI39_RS18105	0.43	-0.9
4,569,466	+		ABI39_RS18105	0.48	-0.7
4,569,467	-		ABI39_RS18105	0.48	+0.8
4,569,570	+		ABI39_RS18105	0.72	-1.7
4,569,570	+		ABI39_RS18105	0.72	-1.7
4,569,571	-		ABI39_RS18105	0.72	-0.3
4,569,571	-		ABI39_RS18105	0.72	-2.1
4,569,573	-		ABI39_RS18105	0.72	+0.4
4,569,575	+		ABI39_RS18105	0.73	-0.6
4,569,575	+		ABI39_RS18105	0.73	-0.4
4,569,668	+				+1.2
4,569,698	-				-0.2
4,569,698	-				-0.5
4,569,751	+		ABI39_RS22410	0.14	+0.5
4,569,752	-		ABI39_RS22410	0.14	-0.9
4,569,787	+		ABI39_RS22410	0.21	-2.0
4,569,787	+		ABI39_RS22410	0.21	-2.2
4,569,906	-		ABI39_RS22410	0.46	-0.1
4,569,906	-		ABI39_RS22410	0.46	+1.1
4,569,915	-		ABI39_RS22410	0.48	-0.4
4,569,916	+		ABI39_RS22410	0.48	-0.6
4,569,917	-		ABI39_RS22410	0.49	+1.4
4,569,932	+		ABI39_RS22410	0.52	-1.1
4,569,969	+		ABI39_RS22410	0.60	-2.3
4,569,975	-		ABI39_RS22410	0.61	+0.1
4,570,192	+				-0.8
4,570,192	+				+0.1
4,570,192	+				+0.1
4,570,192	+				-0.7
4,570,193	-				-0.3
4,570,193	-				-0.5
4,570,258	+				+1.2
4,570,302	-				-0.7
4,570,303	+				-0.2
4,570,304	-				+1.2
4,570,325	+				-0.6
4,570,343	+				-1.0
4,570,368	+				+0.7
4,570,435	-		ABI39_RS18115	0.18	+0.8
4,570,435	-		ABI39_RS18115	0.18	-0.8
4,570,528	-		ABI39_RS18115	0.34	+0.5
4,570,570	-		ABI39_RS18115	0.41	+0.0
4,570,585	-		ABI39_RS18115	0.44	-1.6
4,570,628	+		ABI39_RS18115	0.51	-0.2