Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS15580 and ABI39_RS15585 are separated by 402 nucleotides ABI39_RS15585 and ABI39_RS15590 are separated by 26 nucleotides ABI39_RS15590 and ABI39_RS15595 are separated by 19 nucleotides
ABI39_RS15580: ABI39_RS15580 - ribonucleoside-diphosphate reductase subunit alpha, at 4,029,340 to 4,031,859
_RS15580
ABI39_RS15585: ABI39_RS15585 - hypothetical protein, at 4,032,262 to 4,032,471
_RS15585
ABI39_RS15590: ABI39_RS15590 - hypothetical protein, at 4,032,498 to 4,033,055
_RS15590
ABI39_RS15595: ABI39_RS15595 - putative transporter, at 4,033,075 to 4,034,763
_RS15595
Position (kb) 4032
4033
4034 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4031.528 kb on - strand, within ABI39_RS15580 at 4031.532 kb on + strand, within ABI39_RS15580 at 4031.541 kb on + strand, within ABI39_RS15580 at 4031.542 kb on - strand, within ABI39_RS15580 at 4031.545 kb on - strand, within ABI39_RS15580 at 4031.614 kb on + strand at 4031.615 kb on - strand at 4031.615 kb on - strand at 4031.637 kb on - strand at 4031.686 kb on + strand at 4031.738 kb on - strand at 4031.745 kb on - strand at 4031.873 kb on + strand at 4031.881 kb on - strand at 4032.017 kb on + strand at 4032.230 kb on + strand at 4032.258 kb on - strand at 4032.258 kb on - strand at 4032.387 kb on + strand, within ABI39_RS15585 at 4032.562 kb on - strand, within ABI39_RS15590 at 4032.608 kb on + strand, within ABI39_RS15590 at 4032.803 kb on + strand, within ABI39_RS15590 at 4032.808 kb on - strand, within ABI39_RS15590 at 4032.822 kb on - strand, within ABI39_RS15590 at 4032.847 kb on + strand, within ABI39_RS15590 at 4032.897 kb on + strand, within ABI39_RS15590 at 4032.898 kb on - strand, within ABI39_RS15590 at 4032.901 kb on + strand, within ABI39_RS15590 at 4032.928 kb on + strand, within ABI39_RS15590 at 4032.929 kb on - strand, within ABI39_RS15590 at 4032.929 kb on - strand, within ABI39_RS15590 at 4033.213 kb on - strand at 4033.228 kb on + strand at 4033.253 kb on - strand, within ABI39_RS15595 at 4033.320 kb on - strand, within ABI39_RS15595 at 4033.323 kb on + strand, within ABI39_RS15595 at 4033.332 kb on + strand, within ABI39_RS15595 at 4033.348 kb on + strand, within ABI39_RS15595 at 4033.349 kb on - strand, within ABI39_RS15595 at 4033.397 kb on - strand, within ABI39_RS15595 at 4033.397 kb on - strand, within ABI39_RS15595 at 4033.451 kb on + strand, within ABI39_RS15595 at 4033.467 kb on - strand, within ABI39_RS15595 at 4033.566 kb on + strand, within ABI39_RS15595 at 4033.579 kb on - strand, within ABI39_RS15595 at 4033.691 kb on - strand, within ABI39_RS15595 at 4033.692 kb on + strand, within ABI39_RS15595 at 4033.693 kb on - strand, within ABI39_RS15595 at 4033.969 kb on + strand, within ABI39_RS15595 at 4033.970 kb on - strand, within ABI39_RS15595 at 4033.987 kb on + strand, within ABI39_RS15595
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood; autoclaved 2.5 mg/ml (C) remove 4,031,528 - ABI39_RS15580 0.87 -1.3 4,031,532 + ABI39_RS15580 0.87 +0.1 4,031,541 + ABI39_RS15580 0.87 -1.1 4,031,542 - ABI39_RS15580 0.87 -0.3 4,031,545 - ABI39_RS15580 0.88 -0.1 4,031,614 + +0.3 4,031,615 - -0.5 4,031,615 - +0.6 4,031,637 - +0.1 4,031,686 + -0.3 4,031,738 - -0.8 4,031,745 - +0.9 4,031,873 + -0.6 4,031,881 - -0.3 4,032,017 + -0.3 4,032,230 + -0.2 4,032,258 - +0.3 4,032,258 - +0.8 4,032,387 + ABI39_RS15585 0.60 +0.8 4,032,562 - ABI39_RS15590 0.11 -1.3 4,032,608 + ABI39_RS15590 0.20 -4.3 4,032,803 + ABI39_RS15590 0.55 -1.8 4,032,808 - ABI39_RS15590 0.56 -0.4 4,032,822 - ABI39_RS15590 0.58 -1.3 4,032,847 + ABI39_RS15590 0.63 +0.3 4,032,897 + ABI39_RS15590 0.72 -1.6 4,032,898 - ABI39_RS15590 0.72 -0.5 4,032,901 + ABI39_RS15590 0.72 +1.2 4,032,928 + ABI39_RS15590 0.77 -0.4 4,032,929 - ABI39_RS15590 0.77 -0.7 4,032,929 - ABI39_RS15590 0.77 -4.2 4,033,213 - -1.0 4,033,228 + -1.6 4,033,253 - ABI39_RS15595 0.11 +0.0 4,033,320 - ABI39_RS15595 0.15 -0.0 4,033,323 + ABI39_RS15595 0.15 -0.9 4,033,332 + ABI39_RS15595 0.15 -1.0 4,033,348 + ABI39_RS15595 0.16 -2.8 4,033,349 - ABI39_RS15595 0.16 -2.5 4,033,397 - ABI39_RS15595 0.19 +0.9 4,033,397 - ABI39_RS15595 0.19 -0.7 4,033,451 + ABI39_RS15595 0.22 -1.4 4,033,467 - ABI39_RS15595 0.23 +0.1 4,033,566 + ABI39_RS15595 0.29 -1.1 4,033,579 - ABI39_RS15595 0.30 -1.4 4,033,691 - ABI39_RS15595 0.36 -1.1 4,033,692 + ABI39_RS15595 0.37 -1.2 4,033,693 - ABI39_RS15595 0.37 -0.0 4,033,969 + ABI39_RS15595 0.53 -0.5 4,033,970 - ABI39_RS15595 0.53 -0.7 4,033,987 + ABI39_RS15595 0.54 -2.1
Or see this region's nucleotide sequence