Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS14940

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
3,877,717	-		ABI39_RS14935	0.32	-1.2
3,877,764	-		ABI39_RS14935	0.35	-1.0
3,877,764	-		ABI39_RS14935	0.35	-0.9
3,878,004	+		ABI39_RS14935	0.54	-1.2
3,878,005	-		ABI39_RS14935	0.54	+0.7
3,878,100	+		ABI39_RS14935	0.61	+0.9
3,878,101	-		ABI39_RS14935	0.62	+0.5
3,878,225	-		ABI39_RS14935	0.71	+0.5
3,878,273	-		ABI39_RS14935	0.75	+1.6
3,878,282	+		ABI39_RS14935	0.76	+1.0
3,878,343	+		ABI39_RS14935	0.80	-0.5
3,878,345	+		ABI39_RS14935	0.80	-4.4
3,878,502	+				+0.5
3,878,503	-				-1.0
3,878,508	-				+0.4
3,878,511	+				+0.1
3,878,542	+				+0.0
3,878,542	+				+0.2
3,878,575	-				+0.7
3,878,587	-				+0.1
3,878,710	-				+0.1
3,878,721	+				-0.3
3,879,003	-		ABI39_RS14940	0.69	+0.8
3,879,057	-		ABI39_RS14940	0.82	-0.8
3,879,134	+				+0.3
3,879,141	+				-0.5
3,879,165	+				-0.7
3,879,242	-				+0.0
3,879,247	-				+0.1
3,879,271	+				-0.3
3,879,278	+				-0.3
3,879,278	+				-0.1
3,879,279	-				-1.2
3,879,304	+				-0.1
3,879,307	+				-0.9
3,879,397	+		ABI39_RS14945	0.10	-2.5
3,879,450	+		ABI39_RS14945	0.17	-0.6
3,879,451	-		ABI39_RS14945	0.17	-0.1
3,879,482	-		ABI39_RS14945	0.21	-0.3
3,879,614	+		ABI39_RS14945	0.37	+0.6
3,879,614	+		ABI39_RS14945	0.37	+0.4
3,879,615	-		ABI39_RS14945	0.37	-1.0
3,879,622	-		ABI39_RS14945	0.38	+0.0
3,879,622	-		ABI39_RS14945	0.38	+0.3
3,879,639	-		ABI39_RS14945	0.40	+0.2
3,879,668	+		ABI39_RS14945	0.44	-1.1
3,879,668	+		ABI39_RS14945	0.44	-0.0
3,879,688	-		ABI39_RS14945	0.47	+0.4
3,879,745	+		ABI39_RS14945	0.54	-0.7
3,879,745	+		ABI39_RS14945	0.54	+0.9
3,879,788	-		ABI39_RS14945	0.59	+1.0
3,879,900	+		ABI39_RS14945	0.73	-0.6
3,879,900	+		ABI39_RS14945	0.73	-1.2
3,879,905	-		ABI39_RS14945	0.74	+0.2
3,879,953	+		ABI39_RS14945	0.79	+0.6
3,879,956	+		ABI39_RS14945	0.80	+0.1
3,880,049	+				+1.1
3,880,050	-				-1.9
3,880,059	+				-0.9
3,880,105	+				-0.5
3,880,129	-				+1.8
3,880,130	+				+1.0