Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS14770

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
3,836,639	-		ABI39_RS14760	0.70	+0.4
3,836,832	+				-2.1
3,836,859	+				-1.2
3,836,859	+				-0.9
3,836,859	+				-0.3
3,836,862	-				+0.1
3,836,884	-				-0.1
3,836,915	+				-2.5
3,836,916	-				+1.0
3,836,960	+				+0.1
3,837,061	+		ABI39_RS14765	0.20	-1.6
3,837,061	+		ABI39_RS14765	0.20	-1.1
3,837,062	-		ABI39_RS14765	0.20	-0.4
3,837,072	+		ABI39_RS14765	0.21	-3.0
3,837,073	-		ABI39_RS14765	0.21	-1.3
3,837,073	-		ABI39_RS14765	0.21	+1.1
3,837,094	-		ABI39_RS14765	0.25	-1.8
3,837,105	+		ABI39_RS14765	0.26	-0.1
3,837,132	+		ABI39_RS14765	0.30	+1.1
3,837,133	-		ABI39_RS14765	0.31	-0.4
3,837,159	-		ABI39_RS14765	0.35	+0.3
3,837,159	-		ABI39_RS14765	0.35	+1.0
3,837,163	+		ABI39_RS14765	0.35	-0.7
3,837,164	-		ABI39_RS14765	0.35	+1.1
3,837,255	+		ABI39_RS14765	0.49	-0.8
3,837,255	+		ABI39_RS14765	0.49	-1.0
3,837,256	-		ABI39_RS14765	0.49	-0.4
3,837,289	-		ABI39_RS14765	0.54	+0.2
3,837,292	-		ABI39_RS14765	0.55	+0.7
3,837,368	+		ABI39_RS14765	0.66	-0.7
3,837,387	+		ABI39_RS14765	0.69	+0.5
3,837,448	+		ABI39_RS14765	0.79	-0.9
3,837,463	-		ABI39_RS14765	0.81	-0.2
3,837,560	-				+0.2
3,837,640	+				+1.1
3,837,690	+		ABI39_RS14770	0.16	-3.3
3,837,690	+		ABI39_RS14770	0.16	-0.5
3,837,691	-		ABI39_RS14770	0.16	-0.3
3,837,691	-		ABI39_RS14770	0.16	-1.4
3,837,695	-		ABI39_RS14770	0.17	+0.3
3,837,698	-		ABI39_RS14770	0.18	-1.1
3,837,698	-		ABI39_RS14770	0.18	-1.5
3,837,705	-		ABI39_RS14770	0.19	-2.3
3,837,714	+		ABI39_RS14770	0.20	-0.9
3,837,734	-		ABI39_RS14770	0.24	-1.1
3,837,758	-		ABI39_RS14770	0.28	+0.1
3,837,805	+		ABI39_RS14770	0.36	-0.4
3,837,805	+		ABI39_RS14770	0.36	-0.2
3,837,850	-		ABI39_RS14770	0.44	-1.5
3,837,868	+		ABI39_RS14770	0.47	-0.6
3,837,880	+		ABI39_RS14770	0.49	-0.2
3,837,880	+		ABI39_RS14770	0.49	-2.3
3,837,880	+		ABI39_RS14770	0.49	+0.2
3,837,880	+		ABI39_RS14770	0.49	-2.5
3,837,881	-		ABI39_RS14770	0.49	-0.6
3,837,881	-		ABI39_RS14770	0.49	-0.7
3,837,881	-		ABI39_RS14770	0.49	-0.7
3,837,881	-		ABI39_RS14770	0.49	-1.0
3,837,881	-		ABI39_RS14770	0.49	-3.6
3,837,886	+		ABI39_RS14770	0.50	-0.7
3,837,887	-		ABI39_RS14770	0.50	-0.5
3,837,887	-		ABI39_RS14770	0.50	-0.4
3,837,889	+		ABI39_RS14770	0.50	-0.7
3,837,890	-		ABI39_RS14770	0.51	+0.9
3,837,895	-		ABI39_RS14770	0.51	+0.6
3,837,910	-		ABI39_RS14770	0.54	-0.3
3,837,924	+		ABI39_RS14770	0.56	-2.3
3,837,925	-		ABI39_RS14770	0.57	-0.1
3,837,931	-		ABI39_RS14770	0.58	-2.7
3,837,934	-		ABI39_RS14770	0.58	+0.2
3,838,025	-		ABI39_RS14770	0.74	-2.6
3,838,140	+				+0.3
3,838,188	-				-0.5
3,838,189	+				-1.5
3,838,228	+				-0.8
3,838,244	-				-0.2
3,838,280	-				+0.3
3,838,286	+				+0.5
3,838,286	+				+0.6
3,838,287	-				+0.8
3,838,287	-				-0.6
3,838,294	+				-0.2
3,838,302	-		ABI39_RS14775	0.10	-0.9
3,838,313	+		ABI39_RS14775	0.12	-3.2
3,838,314	-		ABI39_RS14775	0.12	+0.4
3,838,314	-		ABI39_RS14775	0.12	+0.9
3,838,318	+		ABI39_RS14775	0.12	+0.1
3,838,362	+		ABI39_RS14775	0.16	+0.2
3,838,366	-		ABI39_RS14775	0.17	-0.1
3,838,373	-		ABI39_RS14775	0.17	-1.7
3,838,446	-		ABI39_RS14775	0.24	+1.7
3,838,459	+		ABI39_RS14775	0.26	-0.4
3,838,475	+		ABI39_RS14775	0.27	-0.9
3,838,723	-		ABI39_RS14775	0.51	-0.1
3,838,727	-		ABI39_RS14775	0.52	+0.4
3,838,742	-		ABI39_RS14775	0.53	-0.2
3,838,784	-		ABI39_RS14775	0.57	+0.3
3,838,856	-		ABI39_RS14775	0.64	-1.7
3,838,887	+		ABI39_RS14775	0.67	-0.9
3,838,888	-		ABI39_RS14775	0.67	+0.0
3,838,888	-		ABI39_RS14775	0.67	+0.5
3,838,893	-		ABI39_RS14775	0.68	+0.4
3,838,926	-		ABI39_RS14775	0.71	+1.1
3,838,937	+		ABI39_RS14775	0.72	+0.5
3,838,937	+		ABI39_RS14775	0.72	-0.8
3,838,959	-		ABI39_RS14775	0.74	+0.5
3,838,979	+		ABI39_RS14775	0.76	-0.3
3,838,984	-		ABI39_RS14775	0.77	+0.6
3,838,984	-		ABI39_RS14775	0.77	+0.2
3,839,015	-		ABI39_RS14775	0.80	-0.2
3,839,069	-		ABI39_RS14775	0.85	-0.9
3,839,089	+		ABI39_RS14775	0.87	-1.7