Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10315

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
2,753,292	-		ABI39_RS10310	0.71	-0.5
2,753,487	-		ABI39_RS10310	0.77	-0.3
2,753,527	-		ABI39_RS10310	0.78	-2.2
2,753,542	-		ABI39_RS10310	0.79	-0.1
2,753,548	-		ABI39_RS10310	0.79	-0.6
2,753,632	-		ABI39_RS10310	0.82	+0.6
2,753,735	+		ABI39_RS10310	0.85	-2.6
2,753,741	+		ABI39_RS10310	0.85	-0.4
2,753,741	+		ABI39_RS10310	0.85	+0.5
2,753,742	-		ABI39_RS10310	0.85	-1.6
2,753,752	+		ABI39_RS10310	0.85	-0.2
2,753,755	-		ABI39_RS10310	0.85	+1.2
2,753,814	-		ABI39_RS10310	0.87	+0.2
2,753,848	-		ABI39_RS10310	0.88	-1.7
2,754,051	-				+0.8
2,754,067	+				-0.2
2,754,207	+				-0.2
2,754,265	-				+1.6
2,754,307	+				-0.3
2,754,409	+				-0.7
2,754,424	+				-0.4
2,754,539	-		ABI39_RS10315	0.17	+0.2
2,754,539	-		ABI39_RS10315	0.17	-1.6
2,754,561	-		ABI39_RS10315	0.18	-3.8
2,754,593	+		ABI39_RS10315	0.20	-1.2
2,754,596	-		ABI39_RS10315	0.20	+0.7
2,754,664	-		ABI39_RS10315	0.24	+0.2
2,754,674	+		ABI39_RS10315	0.25	+1.2
2,754,734	-		ABI39_RS10315	0.28	+0.9
2,754,823	-		ABI39_RS10315	0.34	+0.4
2,754,932	+		ABI39_RS10315	0.40	-1.1
2,754,933	-		ABI39_RS10315	0.40	-0.4
2,754,940	+		ABI39_RS10315	0.40	+0.6
2,754,979	-		ABI39_RS10315	0.43	-0.4
2,754,984	-		ABI39_RS10315	0.43	-2.0
2,754,986	+		ABI39_RS10315	0.43	-0.1
2,754,987	-		ABI39_RS10315	0.43	-0.5
2,755,028	-		ABI39_RS10315	0.46	-1.5
2,755,103	-		ABI39_RS10315	0.50	-0.0
2,755,199	-		ABI39_RS10315	0.56	+1.1
2,755,199	-		ABI39_RS10315	0.56	+1.0
2,755,207	+		ABI39_RS10315	0.56	+0.2
2,755,254	+		ABI39_RS10315	0.59	-1.6
2,755,256	+		ABI39_RS10315	0.59	-0.3
2,755,256	+		ABI39_RS10315	0.59	-0.5
2,755,257	-		ABI39_RS10315	0.59	+0.9
2,755,257	-		ABI39_RS10315	0.59	+0.4
2,755,333	+		ABI39_RS10315	0.64	-2.4
2,755,348	+		ABI39_RS10315	0.65	-1.1
2,755,351	-		ABI39_RS10315	0.65	+0.6
2,755,460	-		ABI39_RS10315	0.71	+0.2
2,755,472	-		ABI39_RS10315	0.72	+0.2
2,755,602	+		ABI39_RS10315	0.80	-1.3
2,755,602	+		ABI39_RS10315	0.80	-0.4
2,755,606	-		ABI39_RS10315	0.80	-0.1
2,755,660	-		ABI39_RS10315	0.83	-0.3
2,755,671	+		ABI39_RS10315	0.84	-0.2
2,755,678	-		ABI39_RS10315	0.84	+0.5
2,755,697	-		ABI39_RS10315	0.85	-1.8
2,755,735	+		ABI39_RS10315	0.88	-0.6
2,755,782	+				-0.8
2,755,783	-				-0.5
2,755,783	-				-0.3
2,755,847	+				-0.5
2,755,903	-				-0.8
2,755,962	+				+0.1
2,755,970	+				-1.0
2,755,976	-				-0.7
2,755,980	+				+0.9
2,755,981	-				-0.6
2,755,984	-				-0.2
2,755,984	-				-1.4
2,755,984	-				-0.3
2,755,985	+				+0.2
2,755,986	-				-0.7
2,755,986	-				-0.2
2,756,049	+				-0.1
2,756,049	+				-0.2
2,756,094	+				+0.4
2,756,095	-				-1.1
2,756,169	-		ABI39_RS10320	0.12	-1.8
2,756,244	+		ABI39_RS10320	0.17	-1.0
2,756,294	-		ABI39_RS10320	0.20	-1.3
2,756,314	+		ABI39_RS10320	0.21	+1.1
2,756,398	-		ABI39_RS10320	0.26	+0.9
2,756,424	+		ABI39_RS10320	0.28	+0.1
2,756,496	+		ABI39_RS10320	0.32	-0.9
2,756,613	-		ABI39_RS10320	0.39	-0.9
2,756,637	+		ABI39_RS10320	0.40	+1.0
2,756,724	+		ABI39_RS10320	0.45	-0.6
2,756,725	-		ABI39_RS10320	0.46	-0.1
2,756,727	+		ABI39_RS10320	0.46	-1.6
2,756,771	-		ABI39_RS10320	0.48	+1.5
2,756,844	+		ABI39_RS10320	0.53	+0.3
2,756,932	-		ABI39_RS10320	0.58	+0.7