Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03845

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
1,072,823	+				-0.2
1,072,823	+				+1.7
1,072,865	+				+0.2
1,072,984	-				-1.3
1,072,986	-				-0.5
1,073,009	+				+1.7
1,073,010	-				-3.4
1,073,173	+		ABI39_RS03845	0.17	-0.8
1,073,192	-		ABI39_RS03845	0.18	+0.6
1,073,218	+		ABI39_RS03845	0.19	+0.5
1,073,320	+		ABI39_RS03845	0.25	-0.0
1,073,321	-		ABI39_RS03845	0.25	+1.0
1,073,553	-		ABI39_RS03845	0.38	+0.7
1,073,563	+		ABI39_RS03845	0.38	+1.4
1,073,563	+		ABI39_RS03845	0.38	+0.3
1,073,567	+		ABI39_RS03845	0.39	+0.4
1,073,568	-		ABI39_RS03845	0.39	+1.3
1,073,568	-		ABI39_RS03845	0.39	+0.9
1,073,569	+		ABI39_RS03845	0.39	-0.1
1,073,572	+		ABI39_RS03845	0.39	+0.5
1,073,624	+		ABI39_RS03845	0.42	-1.6
1,073,740	+		ABI39_RS03845	0.48	+0.8
1,073,746	+		ABI39_RS03845	0.49	+1.2
1,073,747	-		ABI39_RS03845	0.49	+1.2
1,073,798	-		ABI39_RS03845	0.52	+1.4
1,073,798	-		ABI39_RS03845	0.52	-0.1
1,073,902	+		ABI39_RS03845	0.57	-4.6
1,073,903	-		ABI39_RS03845	0.58	-1.5
1,073,941	-		ABI39_RS03845	0.60	+1.2
1,073,952	-		ABI39_RS03845	0.60	+0.1
1,073,978	+		ABI39_RS03845	0.62	+1.2
1,074,154	+		ABI39_RS03845	0.72	+1.2
1,074,160	+		ABI39_RS03845	0.72	-0.5
1,074,265	-		ABI39_RS03845	0.78	+0.8
1,074,307	+		ABI39_RS03845	0.80	-0.1
1,074,307	+		ABI39_RS03845	0.80	+1.3
1,074,353	-		ABI39_RS03845	0.83	-0.0
1,074,393	+		ABI39_RS03845	0.85	+0.3
1,074,393	+		ABI39_RS03845	0.85	-1.0
1,074,393	+		ABI39_RS03845	0.85	+2.2
1,074,394	-		ABI39_RS03845	0.85	-0.4
1,074,394	-		ABI39_RS03845	0.85	-0.1
1,074,396	-		ABI39_RS03845	0.85	+0.6
1,074,436	+		ABI39_RS03845	0.87	+1.4
1,074,472	-		ABI39_RS03845	0.89	+0.7
1,074,491	+				+1.5
1,074,530	+				-0.6
1,074,550	+				-1.7
1,074,551	-				+0.4
1,074,637	+				-0.5
1,074,637	+				+1.7
1,074,678	-				-0.7
1,074,743	+		ABI39_RS03850	0.14	-1.2
1,074,744	-		ABI39_RS03850	0.14	-1.3
1,074,860	-		ABI39_RS03850	0.36	+0.7
1,074,871	+		ABI39_RS03850	0.38	-1.1
1,074,920	+		ABI39_RS03850	0.48	-0.1
1,074,920	+		ABI39_RS03850	0.48	-1.2
1,074,932	-		ABI39_RS03850	0.50	-0.4
1,075,013	+		ABI39_RS03850	0.66	-1.0
1,075,019	-		ABI39_RS03850	0.67	-1.1
1,075,037	-		ABI39_RS03850	0.70	-1.1
1,075,157	-				-0.6
1,075,162	-				+0.2
1,075,198	-				-0.6
1,075,317	-		ABI39_RS03855	0.16	-1.0
1,075,381	-		ABI39_RS03855	0.29	+0.8
1,075,385	+		ABI39_RS03855	0.30	+1.4
1,075,469	+		ABI39_RS03855	0.47	+1.1
1,075,508	-		ABI39_RS03855	0.55	+1.8
1,075,526	+		ABI39_RS03855	0.58	-0.2
1,075,536	-		ABI39_RS03855	0.60	+0.4
1,075,628	+		ABI39_RS03855	0.79	+0.5