Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02555 and ABI39_RS02560 are separated by 21 nucleotides ABI39_RS02560 and ABI39_RS02565 are separated by 211 nucleotides
ABI39_RS02555: ABI39_RS02555 - RagB/SusD family nutrient uptake outer membrane protein, at 723,158 to 724,792
_RS02555
ABI39_RS02560: ABI39_RS02560 - TonB-dependent receptor, at 724,814 to 727,762
_RS02560
ABI39_RS02565: ABI39_RS02565 - helix-turn-helix domain-containing protein, at 727,974 to 730,814
_RS02565
Position (kb) 724
725
726
727
728 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.888 kb on + strand, within ABI39_RS02555 at 723.888 kb on + strand, within ABI39_RS02555 at 724.035 kb on + strand, within ABI39_RS02555 at 724.113 kb on - strand, within ABI39_RS02555 at 724.144 kb on + strand, within ABI39_RS02555 at 724.338 kb on - strand, within ABI39_RS02555 at 724.441 kb on - strand, within ABI39_RS02555 at 724.463 kb on + strand, within ABI39_RS02555 at 724.490 kb on - strand, within ABI39_RS02555 at 724.509 kb on + strand, within ABI39_RS02555 at 724.514 kb on - strand, within ABI39_RS02555 at 724.625 kb on + strand, within ABI39_RS02555 at 724.630 kb on - strand at 724.647 kb on + strand at 724.919 kb on - strand at 724.936 kb on + strand at 724.979 kb on + strand at 724.984 kb on - strand at 724.984 kb on - strand at 724.984 kb on - strand at 725.020 kb on + strand at 725.021 kb on - strand at 725.021 kb on - strand at 725.038 kb on - strand at 725.157 kb on - strand, within ABI39_RS02560 at 725.252 kb on - strand, within ABI39_RS02560 at 725.276 kb on - strand, within ABI39_RS02560 at 725.331 kb on + strand, within ABI39_RS02560 at 725.332 kb on - strand, within ABI39_RS02560 at 725.490 kb on + strand, within ABI39_RS02560 at 725.540 kb on - strand, within ABI39_RS02560 at 725.724 kb on + strand, within ABI39_RS02560 at 725.871 kb on + strand, within ABI39_RS02560 at 725.891 kb on - strand, within ABI39_RS02560 at 726.211 kb on + strand, within ABI39_RS02560 at 726.214 kb on + strand, within ABI39_RS02560 at 726.250 kb on - strand, within ABI39_RS02560 at 726.292 kb on + strand, within ABI39_RS02560 at 726.292 kb on + strand, within ABI39_RS02560 at 726.338 kb on - strand, within ABI39_RS02560 at 726.339 kb on + strand, within ABI39_RS02560 at 726.378 kb on + strand, within ABI39_RS02560 at 726.427 kb on + strand, within ABI39_RS02560 at 726.428 kb on - strand, within ABI39_RS02560 at 726.523 kb on + strand, within ABI39_RS02560 at 726.628 kb on + strand, within ABI39_RS02560 at 726.629 kb on - strand, within ABI39_RS02560 at 726.715 kb on + strand, within ABI39_RS02560 at 726.852 kb on + strand, within ABI39_RS02560 at 726.870 kb on - strand, within ABI39_RS02560 at 726.871 kb on - strand, within ABI39_RS02560 at 727.097 kb on - strand, within ABI39_RS02560 at 727.418 kb on + strand, within ABI39_RS02560 at 727.418 kb on + strand, within ABI39_RS02560 at 727.439 kb on - strand, within ABI39_RS02560 at 727.548 kb on + strand at 727.548 kb on + strand at 727.562 kb on + strand at 727.563 kb on - strand at 727.588 kb on + strand at 727.625 kb on - strand at 727.627 kb on + strand at 727.738 kb on + strand at 727.783 kb on - strand at 727.784 kb on + strand at 727.784 kb on + strand at 727.784 kb on + strand at 727.902 kb on + strand at 727.915 kb on - strand at 727.920 kb on + strand at 728.063 kb on - strand at 728.072 kb on + strand at 728.210 kb on + strand at 728.255 kb on + strand at 728.277 kb on + strand, within ABI39_RS02565 at 728.363 kb on + strand, within ABI39_RS02565 at 728.426 kb on + strand, within ABI39_RS02565 at 728.428 kb on + strand, within ABI39_RS02565 at 728.436 kb on - strand, within ABI39_RS02565 at 728.604 kb on - strand, within ABI39_RS02565 at 728.606 kb on - strand, within ABI39_RS02565 at 728.680 kb on - strand, within ABI39_RS02565
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood; autoclaved 2.5 mg/ml (C) remove 723,888 + ABI39_RS02555 0.45 +0.3 723,888 + ABI39_RS02555 0.45 -0.6 724,035 + ABI39_RS02555 0.54 +1.0 724,113 - ABI39_RS02555 0.58 -0.0 724,144 + ABI39_RS02555 0.60 -0.0 724,338 - ABI39_RS02555 0.72 +1.2 724,441 - ABI39_RS02555 0.78 +0.3 724,463 + ABI39_RS02555 0.80 -1.3 724,490 - ABI39_RS02555 0.81 -1.3 724,509 + ABI39_RS02555 0.83 -0.1 724,514 - ABI39_RS02555 0.83 +0.8 724,625 + ABI39_RS02555 0.90 +2.0 724,630 - +1.2 724,647 + -0.4 724,919 - -1.2 724,936 + -1.0 724,979 + +0.2 724,984 - -2.0 724,984 - -0.0 724,984 - -1.6 725,020 + +1.0 725,021 - -0.1 725,021 - +0.2 725,038 - -0.6 725,157 - ABI39_RS02560 0.12 -0.9 725,252 - ABI39_RS02560 0.15 -1.0 725,276 - ABI39_RS02560 0.16 +0.7 725,331 + ABI39_RS02560 0.18 -1.6 725,332 - ABI39_RS02560 0.18 +0.1 725,490 + ABI39_RS02560 0.23 -0.7 725,540 - ABI39_RS02560 0.25 +0.5 725,724 + ABI39_RS02560 0.31 +1.0 725,871 + ABI39_RS02560 0.36 +0.5 725,891 - ABI39_RS02560 0.37 -2.4 726,211 + ABI39_RS02560 0.47 +0.6 726,214 + ABI39_RS02560 0.47 -0.7 726,250 - ABI39_RS02560 0.49 +0.6 726,292 + ABI39_RS02560 0.50 -0.2 726,292 + ABI39_RS02560 0.50 +0.9 726,338 - ABI39_RS02560 0.52 -0.4 726,339 + ABI39_RS02560 0.52 +0.5 726,378 + ABI39_RS02560 0.53 +0.1 726,427 + ABI39_RS02560 0.55 -0.2 726,428 - ABI39_RS02560 0.55 +0.3 726,523 + ABI39_RS02560 0.58 +1.5 726,628 + ABI39_RS02560 0.62 -0.0 726,629 - ABI39_RS02560 0.62 +0.9 726,715 + ABI39_RS02560 0.64 +1.5 726,852 + ABI39_RS02560 0.69 +0.5 726,870 - ABI39_RS02560 0.70 -2.7 726,871 - ABI39_RS02560 0.70 +1.1 727,097 - ABI39_RS02560 0.77 +0.9 727,418 + ABI39_RS02560 0.88 -1.2 727,418 + ABI39_RS02560 0.88 +0.1 727,439 - ABI39_RS02560 0.89 +0.9 727,548 + -0.2 727,548 + -0.3 727,562 + +0.9 727,563 - -0.3 727,588 + -0.8 727,625 - +1.3 727,627 + -0.9 727,738 + -1.9 727,783 - -1.1 727,784 + +0.3 727,784 + +0.4 727,784 + -1.4 727,902 + +0.5 727,915 - +0.2 727,920 + +0.7 728,063 - +0.3 728,072 + -1.1 728,210 + +0.5 728,255 + -2.2 728,277 + ABI39_RS02565 0.11 -0.1 728,363 + ABI39_RS02565 0.14 +1.3 728,426 + ABI39_RS02565 0.16 +0.2 728,428 + ABI39_RS02565 0.16 +0.1 728,436 - ABI39_RS02565 0.16 -0.7 728,604 - ABI39_RS02565 0.22 -1.0 728,606 - ABI39_RS02565 0.22 +0.4 728,680 - ABI39_RS02565 0.25 -0.7
Or see this region's nucleotide sequence