Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00325

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00320 and ABI39_RS00325 are separated by 67 nucleotidesABI39_RS00325 and ABI39_RS00330 are separated by 12 nucleotides ABI39_RS00320: ABI39_RS00320 - transglutaminase domain-containing protein, at 89,394 to 91,341 _RS00320 ABI39_RS00325: ABI39_RS00325 - sel1 repeat family protein, at 91,409 to 92,362 _RS00325 ABI39_RS00330: ABI39_RS00330 - hypothetical protein, at 92,375 to 93,430 _RS00330 Position (kb) 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 90.512 kb on + strand, within ABI39_RS00320at 90.512 kb on + strand, within ABI39_RS00320at 90.624 kb on - strand, within ABI39_RS00320at 90.664 kb on + strand, within ABI39_RS00320at 90.720 kb on + strand, within ABI39_RS00320at 90.818 kb on + strand, within ABI39_RS00320at 90.827 kb on + strand, within ABI39_RS00320at 90.829 kb on + strand, within ABI39_RS00320at 90.870 kb on + strand, within ABI39_RS00320at 90.870 kb on + strand, within ABI39_RS00320at 90.870 kb on + strand, within ABI39_RS00320at 90.880 kb on + strand, within ABI39_RS00320at 90.955 kb on + strand, within ABI39_RS00320at 90.960 kb on + strand, within ABI39_RS00320at 90.999 kb on - strand, within ABI39_RS00320at 90.999 kb on - strand, within ABI39_RS00320at 91.012 kb on + strand, within ABI39_RS00320at 91.013 kb on - strand, within ABI39_RS00320at 91.072 kb on - strand, within ABI39_RS00320at 91.109 kb on + strand, within ABI39_RS00320at 91.134 kb on - strand, within ABI39_RS00320at 91.152 kb on + strandat 91.345 kb on - strandat 91.381 kb on + strandat 91.457 kb on + strandat 91.502 kb on + strandat 91.503 kb on - strandat 91.536 kb on - strand, within ABI39_RS00325at 91.687 kb on + strand, within ABI39_RS00325at 91.688 kb on - strand, within ABI39_RS00325at 91.688 kb on - strand, within ABI39_RS00325at 91.802 kb on - strand, within ABI39_RS00325at 92.014 kb on - strand, within ABI39_RS00325at 92.045 kb on - strand, within ABI39_RS00325at 92.047 kb on + strand, within ABI39_RS00325at 92.149 kb on - strand, within ABI39_RS00325at 92.163 kb on - strand, within ABI39_RS00325at 92.217 kb on + strand, within ABI39_RS00325at 92.325 kb on - strandat 92.327 kb on - strandat 92.343 kb on + strandat 92.379 kb on + strandat 92.396 kb on - strandat 92.396 kb on - strandat 92.479 kb on + strandat 92.481 kb on + strand, within ABI39_RS00330at 92.481 kb on + strand, within ABI39_RS00330at 92.482 kb on - strand, within ABI39_RS00330at 92.572 kb on - strand, within ABI39_RS00330at 92.583 kb on - strand, within ABI39_RS00330at 92.611 kb on - strand, within ABI39_RS00330at 92.625 kb on + strand, within ABI39_RS00330at 92.625 kb on + strand, within ABI39_RS00330at 92.651 kb on + strand, within ABI39_RS00330at 92.739 kb on + strand, within ABI39_RS00330at 92.747 kb on + strand, within ABI39_RS00330at 92.841 kb on + strand, within ABI39_RS00330at 92.880 kb on - strand, within ABI39_RS00330at 92.907 kb on + strand, within ABI39_RS00330at 92.948 kb on - strand, within ABI39_RS00330at 93.014 kb on + strand, within ABI39_RS00330at 93.015 kb on - strand, within ABI39_RS00330at 93.052 kb on + strand, within ABI39_RS00330at 93.073 kb on + strand, within ABI39_RS00330at 93.079 kb on - strand, within ABI39_RS00330at 93.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
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90,512 + ABI39_RS00320 0.57 -0.0
90,512 + ABI39_RS00320 0.57 -0.3
90,624 - ABI39_RS00320 0.63 -1.4
90,664 + ABI39_RS00320 0.65 +0.7
90,720 + ABI39_RS00320 0.68 +0.6
90,818 + ABI39_RS00320 0.73 +0.7
90,827 + ABI39_RS00320 0.74 +0.6
90,829 + ABI39_RS00320 0.74 +0.4
90,870 + ABI39_RS00320 0.76 +0.6
90,870 + ABI39_RS00320 0.76 +0.9
90,870 + ABI39_RS00320 0.76 -0.4
90,880 + ABI39_RS00320 0.76 -0.5
90,955 + ABI39_RS00320 0.80 +0.8
90,960 + ABI39_RS00320 0.80 -0.8
90,999 - ABI39_RS00320 0.82 +0.0
90,999 - ABI39_RS00320 0.82 +0.3
91,012 + ABI39_RS00320 0.83 +0.2
91,013 - ABI39_RS00320 0.83 +1.1
91,072 - ABI39_RS00320 0.86 +0.6
91,109 + ABI39_RS00320 0.88 +0.8
91,134 - ABI39_RS00320 0.89 +0.8
91,152 + -0.1
91,345 - -1.5
91,381 + +0.4
91,457 + +0.9
91,502 + +1.6
91,503 - -0.1
91,536 - ABI39_RS00325 0.13 -0.8
91,687 + ABI39_RS00325 0.29 -3.3
91,688 - ABI39_RS00325 0.29 +2.8
91,688 - ABI39_RS00325 0.29 +0.3
91,802 - ABI39_RS00325 0.41 -0.5
92,014 - ABI39_RS00325 0.63 +1.4
92,045 - ABI39_RS00325 0.67 +1.5
92,047 + ABI39_RS00325 0.67 +0.1
92,149 - ABI39_RS00325 0.78 +1.4
92,163 - ABI39_RS00325 0.79 +1.5
92,217 + ABI39_RS00325 0.85 +1.5
92,325 - -0.5
92,327 - -1.0
92,343 + +0.4
92,379 + -1.8
92,396 - +0.4
92,396 - +0.5
92,479 + +1.2
92,481 + ABI39_RS00330 0.10 +0.8
92,481 + ABI39_RS00330 0.10 +0.6
92,482 - ABI39_RS00330 0.10 -1.1
92,572 - ABI39_RS00330 0.19 -0.1
92,583 - ABI39_RS00330 0.20 +1.7
92,611 - ABI39_RS00330 0.22 -0.6
92,625 + ABI39_RS00330 0.24 -0.0
92,625 + ABI39_RS00330 0.24 -0.9
92,651 + ABI39_RS00330 0.26 -0.4
92,739 + ABI39_RS00330 0.34 -0.6
92,747 + ABI39_RS00330 0.35 +0.3
92,841 + ABI39_RS00330 0.44 -1.1
92,880 - ABI39_RS00330 0.48 -0.2
92,907 + ABI39_RS00330 0.50 +0.1
92,948 - ABI39_RS00330 0.54 -1.8
93,014 + ABI39_RS00330 0.61 +0.8
93,015 - ABI39_RS00330 0.61 -1.0
93,052 + ABI39_RS00330 0.64 -1.0
93,073 + ABI39_RS00330 0.66 -1.7
93,079 - ABI39_RS00330 0.67 +0.6
93,332 - +0.6

Or see this region's nucleotide sequence