Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS23200

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
4,648,842	+		ABI39_RS18440	0.40	+1.7
4,648,868	-		ABI39_RS18440	0.41	-0.0
4,648,909	-		ABI39_RS18440	0.44	-0.1
4,648,909	-		ABI39_RS18440	0.44	+0.3
4,648,949	+		ABI39_RS18440	0.46	+0.8
4,648,950	-		ABI39_RS18440	0.46	+0.2
4,648,950	-		ABI39_RS18440	0.46	+0.7
4,648,954	-		ABI39_RS18440	0.47	-0.0
4,649,052	+		ABI39_RS18440	0.53	-2.4
4,649,080	-		ABI39_RS18440	0.55	-0.6
4,649,124	+		ABI39_RS18440	0.58	-1.6
4,649,124	+		ABI39_RS18440	0.58	+1.1
4,649,212	-		ABI39_RS18440	0.63	+0.4
4,649,345	+		ABI39_RS18440	0.72	-1.3
4,649,345	+		ABI39_RS18440	0.72	-0.3
4,649,486	-		ABI39_RS18440	0.81	+0.3
4,649,573	-		ABI39_RS18440	0.86	-1.2
4,649,607	-		ABI39_RS18440	0.88	-0.9
4,649,727	-				-1.2
4,649,777	-				-2.7
4,649,808	+				+0.0
4,649,811	-				-3.9
4,649,813	+				-0.2
4,649,855	+				-0.0
4,649,924	+				-0.5
4,649,925	-				-2.3
4,649,927	+				+0.3
4,650,017	-				-3.2
4,650,018	+				-1.0
4,650,019	-				-1.7
4,650,167	+				+0.4
4,650,168	-				-2.6
4,650,207	+				-3.2
4,650,326	+				-2.7
4,650,377	-		ABI39_RS23200	0.11	-1.6
4,650,624	-		ABI39_RS23200	0.15	-2.0
4,650,629	+		ABI39_RS23200	0.15	+0.3
4,650,763	+		ABI39_RS23200	0.18	-0.9
4,650,764	-		ABI39_RS23200	0.18	-2.0
4,650,766	-		ABI39_RS23200	0.18	-1.4
4,650,830	+		ABI39_RS23200	0.19	+0.6
4,650,875	+		ABI39_RS23200	0.20	-0.5
4,650,927	-		ABI39_RS23200	0.21	-0.6
4,650,927	-		ABI39_RS23200	0.21	-0.9
4,650,927	-		ABI39_RS23200	0.21	-1.9
4,650,927	-		ABI39_RS23200	0.21	-1.6
4,650,957	-		ABI39_RS23200	0.21	+0.1
4,650,963	-		ABI39_RS23200	0.21	-0.6
4,650,972	-		ABI39_RS23200	0.21	-3.7
4,651,026	+		ABI39_RS23200	0.22	-1.2
4,651,033	-		ABI39_RS23200	0.23	-2.0
4,651,213	-		ABI39_RS23200	0.26	-2.7
4,651,216	-		ABI39_RS23200	0.26	-2.4
4,651,216	-		ABI39_RS23200	0.26	-1.7
4,651,236	-		ABI39_RS23200	0.26	-0.6
4,651,270	+		ABI39_RS23200	0.27	-1.5
4,651,272	+		ABI39_RS23200	0.27	-1.1
4,651,296	+		ABI39_RS23200	0.27	-1.8
4,651,297	-		ABI39_RS23200	0.27	-1.4
4,651,299	-		ABI39_RS23200	0.27	-0.6
4,651,313	+		ABI39_RS23200	0.28	-1.1
4,651,320	+		ABI39_RS23200	0.28	-2.7
4,651,409	-		ABI39_RS23200	0.29	-1.4
4,651,411	-		ABI39_RS23200	0.30	-1.9
4,651,419	+		ABI39_RS23200	0.30	-0.6
4,651,420	-		ABI39_RS23200	0.30	-1.4
4,651,421	+		ABI39_RS23200	0.30	-0.6
4,651,422	-		ABI39_RS23200	0.30	-0.2
4,651,425	-		ABI39_RS23200	0.30	-3.1
4,651,475	+		ABI39_RS23200	0.31	-0.1
4,651,612	+		ABI39_RS23200	0.33	-0.5
4,651,612	+		ABI39_RS23200	0.33	+0.0
4,651,614	+		ABI39_RS23200	0.33	-0.4
4,651,673	+		ABI39_RS23200	0.34	-1.2
4,651,715	+		ABI39_RS23200	0.35	-0.9
4,651,755	-		ABI39_RS23200	0.36	-1.4
4,651,770	+		ABI39_RS23200	0.36	+2.4
4,651,795	-		ABI39_RS23200	0.37	-2.7
4,651,796	+		ABI39_RS23200	0.37	+0.4
4,651,798	+		ABI39_RS23200	0.37	-0.3
4,651,799	-		ABI39_RS23200	0.37	-2.5
4,651,926	+		ABI39_RS23200	0.39	+0.5
4,651,927	-		ABI39_RS23200	0.39	-1.4
4,651,960	+		ABI39_RS23200	0.40	-0.6
4,651,961	-		ABI39_RS23200	0.40	-0.3
4,651,961	-		ABI39_RS23200	0.40	-2.2
4,651,993	+		ABI39_RS23200	0.40	-1.6
4,651,998	+		ABI39_RS23200	0.40	-0.4
4,652,056	+		ABI39_RS23200	0.41	-0.7
4,652,056	+		ABI39_RS23200	0.41	-1.0
4,652,070	-		ABI39_RS23200	0.42	-1.2
4,652,097	-		ABI39_RS23200	0.42	-2.5
4,652,108	+		ABI39_RS23200	0.42	-1.1
4,652,144	-		ABI39_RS23200	0.43	-2.9
4,652,175	+		ABI39_RS23200	0.44	+0.4
4,652,178	+		ABI39_RS23200	0.44	-1.2
4,652,180	+		ABI39_RS23200	0.44	-0.6
4,652,180	+		ABI39_RS23200	0.44	-1.6
4,652,181	-		ABI39_RS23200	0.44	-2.8
4,652,334	-		ABI39_RS23200	0.46	-2.3
4,652,394	+		ABI39_RS23200	0.48	-1.3
4,652,428	-		ABI39_RS23200	0.48	-2.3
4,652,457	+		ABI39_RS23200	0.49	+0.1
4,652,486	+		ABI39_RS23200	0.49	+0.3
4,652,582	+		ABI39_RS23200	0.51	-1.3
4,652,604	+		ABI39_RS23200	0.51	-0.8
4,652,605	-		ABI39_RS23200	0.51	-1.4
4,652,617	+		ABI39_RS23200	0.52	-1.0
4,652,618	-		ABI39_RS23200	0.52	-1.2
4,652,618	-		ABI39_RS23200	0.52	+0.4
4,652,618	-		ABI39_RS23200	0.52	-0.2
4,652,619	+		ABI39_RS23200	0.52	-0.3
4,652,619	+		ABI39_RS23200	0.52	-0.7
4,652,620	-		ABI39_RS23200	0.52	-2.0
4,652,620	-		ABI39_RS23200	0.52	-2.6
4,652,732	+		ABI39_RS23200	0.54	-0.5
4,652,733	-		ABI39_RS23200	0.54	-1.4
4,652,757	+		ABI39_RS23200	0.54	-0.1
4,652,788	+		ABI39_RS23200	0.55	-0.3
4,652,788	+		ABI39_RS23200	0.55	-1.1
4,652,893	+		ABI39_RS23200	0.57	-2.6
4,652,906	+		ABI39_RS23200	0.57	-1.2
4,652,919	+		ABI39_RS23200	0.57	-1.9
4,652,921	+		ABI39_RS23200	0.57	+1.1
4,652,922	-		ABI39_RS23200	0.57	-2.7
4,652,966	+		ABI39_RS23200	0.58	-1.6
4,652,972	+		ABI39_RS23200	0.58	-1.0
4,653,033	-		ABI39_RS23200	0.59	+1.4
4,653,111	+		ABI39_RS23200	0.61	+1.1
4,653,176	+		ABI39_RS23200	0.62	-0.0
4,653,240	-		ABI39_RS23200	0.63	-1.2
4,653,359	+		ABI39_RS23200	0.65	-0.5
4,653,370	-		ABI39_RS23200	0.65	-2.2
4,653,462	+		ABI39_RS23200	0.67	+1.2
4,653,561	+		ABI39_RS23200	0.69	-0.4
4,653,630	+		ABI39_RS23200	0.70	-0.5
4,653,649	+		ABI39_RS23200	0.71	+0.5
4,653,652	-		ABI39_RS23200	0.71	-1.7
4,653,792	+		ABI39_RS23200	0.73	-0.1
4,653,994	-		ABI39_RS23200	0.77	-1.7
4,653,996	+		ABI39_RS23200	0.77	-1.2
4,654,036	-		ABI39_RS23200	0.78	-2.7
4,654,095	+		ABI39_RS23200	0.79	+0.2
4,654,188	+		ABI39_RS23200	0.80	+0.3
4,654,189	-		ABI39_RS23200	0.81	-2.2
4,654,243	-		ABI39_RS23200	0.81	-2.7
4,654,245	-		ABI39_RS23200	0.82	-1.7
4,654,464	-		ABI39_RS23200	0.86	-1.2
4,654,556	+		ABI39_RS23200	0.87	+0.4
4,654,572	+		ABI39_RS23200	0.88	-0.6
4,654,727	+				-0.2
4,654,818	+				+0.6
4,654,891	+				-0.7
4,654,950	+				+0.9
4,655,024	+				+0.6
4,655,099	+				-0.6
4,655,118	+				-2.8
4,655,141	-				-1.7
4,655,141	-				-2.3
4,655,154	+				+0.7
4,655,232	+				+0.2
4,655,900	+				-3.2
4,655,902	+				+0.3
4,655,902	+				-1.6
4,655,903	-				-0.9
4,655,903	-				-0.2
4,655,903	-				+0.9
4,656,002	+				-0.2
4,656,003	-				-0.7
4,656,003	-				+0.8
4,656,014	-				-0.5
4,656,051	+				-0.2
4,656,053	+				-1.3
4,656,054	-				+1.1
4,656,054	-				+0.6
4,656,054	-				-1.8
4,656,076	+				+0.3
4,656,175	+		ABI39_RS18455	0.14	-0.8
4,656,176	-		ABI39_RS18455	0.14	-0.5