Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS19840

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
4,914,144	+				+0.4
4,914,144	+				-1.9
4,914,150	-				-1.1
4,914,150	-				+0.2
4,914,156	-				+0.1
4,914,163	+				-0.3
4,914,234	-		ABI39_RS19835	0.13	+0.6
4,914,254	-		ABI39_RS19835	0.16	+0.5
4,914,262	-		ABI39_RS19835	0.18	+0.8
4,914,328	-		ABI39_RS19835	0.29	-1.2
4,914,409	-		ABI39_RS19835	0.44	+0.9
4,914,526	-		ABI39_RS19835	0.64	-0.3
4,914,531	-		ABI39_RS19835	0.65	-0.4
4,914,605	+		ABI39_RS19835	0.78	+0.3
4,914,605	+		ABI39_RS19835	0.78	+0.5
4,914,619	+		ABI39_RS19835	0.81	+0.1
4,914,619	+		ABI39_RS19835	0.81	-1.1
4,914,648	+		ABI39_RS19835	0.86	+1.1
4,914,721	+				+0.7
4,914,722	-				-0.4
4,914,722	-				+0.2
4,914,741	-				+0.2
4,914,783	+				-1.0
4,914,804	+				+0.9
4,914,822	-				+0.6
4,914,822	-				+0.7
4,915,088	-				-0.4
4,915,121	-				+0.1
4,915,293	-		ABI39_RS19840	0.80	-0.1
4,915,293	-		ABI39_RS19840	0.80	-1.9
4,915,293	-		ABI39_RS19840	0.80	-2.7
4,915,295	-		ABI39_RS19840	0.81	-0.8
4,915,304	-		ABI39_RS19840	0.85	-1.2
4,915,496	-				-2.9
4,915,499	-				+1.0
4,915,557	-		ABI39_RS19845	0.27	-0.4
4,915,728	-		ABI39_RS19845	0.87	-0.2
4,915,755	-				+0.5
4,915,772	-				+0.3
4,915,805	-				-1.3
4,915,818	-				-0.4
4,916,141	-		ABI39_RS19850	0.34	-1.8
4,916,144	-		ABI39_RS19850	0.34	-0.4
4,916,171	-		ABI39_RS19850	0.37	+0.7
4,916,179	-		ABI39_RS19850	0.38	+0.5
4,916,237	-		ABI39_RS19850	0.44	+0.5
4,916,250	-		ABI39_RS19850	0.46	+1.1