Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13095

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
3,415,360	+				-1.5
3,415,362	+				-0.3
3,415,362	+				+0.1
3,415,363	-				+0.8
3,415,374	-				-0.3
3,415,564	-		ABI39_RS13090	0.19	+0.7
3,415,834	+		ABI39_RS13090	0.58	+0.4
3,415,906	-		ABI39_RS13090	0.68	+1.1
3,415,946	+		ABI39_RS13090	0.74	-0.8
3,416,028	-		ABI39_RS13090	0.86	-0.1
3,416,029	+		ABI39_RS13090	0.86	-0.7
3,416,030	-		ABI39_RS13090	0.86	+1.5
3,416,030	-		ABI39_RS13090	0.86	+0.8
3,416,030	-		ABI39_RS13090	0.86	-0.6
3,416,131	-				+1.3
3,416,135	-				+0.5
3,416,216	+				-0.2
3,416,296	+				-0.9
3,416,365	+				-1.9
3,416,365	+				-0.0
3,416,405	+				-1.0
3,416,520	+		ABI39_RS13095	0.15	+0.1
3,416,634	+		ABI39_RS13095	0.21	-0.4
3,416,768	+		ABI39_RS13095	0.29	-0.9
3,416,831	+		ABI39_RS13095	0.32	+1.2
3,416,855	+		ABI39_RS13095	0.33	+0.7
3,417,086	+		ABI39_RS13095	0.46	+1.1
3,417,301	+		ABI39_RS13095	0.58	-0.3
3,417,439	+		ABI39_RS13095	0.66	+0.9
3,417,710	+		ABI39_RS13095	0.80	+0.2
3,417,889	+				-3.2
3,417,901	+				+0.4
3,418,053	+				+0.5
3,418,140	+				+1.0
3,418,140	+				-1.1
3,418,355	+		ABI39_RS13100	0.13	+0.4
3,418,550	+		ABI39_RS13100	0.32	-1.3
3,418,710	+		ABI39_RS13100	0.48	-0.5
3,418,738	+		ABI39_RS13100	0.51	+0.7