Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11390

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
3,026,359	-		ABI39_RS11380	0.77	+1.4
3,026,362	-		ABI39_RS11380	0.78	+2.0
3,026,362	-		ABI39_RS11380	0.78	+1.3
3,026,362	-		ABI39_RS11380	0.78	-0.1
3,026,384	-		ABI39_RS11380	0.81	-2.2
3,026,628	-				-1.8
3,026,653	+				+1.5
3,026,960	+		ABI39_RS11385	0.68	+1.6
3,026,964	+		ABI39_RS11385	0.69	-0.5
3,026,965	-		ABI39_RS11385	0.69	-0.8
3,027,035	-		ABI39_RS11385	0.84	-0.1
3,027,118	+				-0.9
3,027,118	+				-1.4
3,027,150	+				+0.5
3,027,177	+				+0.7
3,027,242	-				+1.0
3,027,318	+				-0.7
3,027,370	+				+0.2
3,027,383	-				-0.4
3,027,386	-				+0.4
3,027,386	-				-1.3
3,027,387	+				-0.9
3,027,393	-				-0.7
3,027,393	-				-0.8
3,027,407	+				+0.3
3,027,491	+		ABI39_RS11390	0.16	+0.5
3,027,492	-		ABI39_RS11390	0.16	-0.5
3,027,526	-		ABI39_RS11390	0.18	+0.4
3,027,612	-		ABI39_RS11390	0.24	-0.1
3,027,614	+		ABI39_RS11390	0.24	-2.0
3,027,640	-		ABI39_RS11390	0.26	-1.1
3,027,879	+		ABI39_RS11390	0.43	-0.4
3,027,884	+		ABI39_RS11390	0.44	+0.7
3,028,011	+		ABI39_RS11390	0.53	-0.9
3,028,012	-		ABI39_RS11390	0.53	-1.3
3,028,039	-		ABI39_RS11390	0.55	+0.5
3,028,039	-		ABI39_RS11390	0.55	-1.5
3,028,041	-		ABI39_RS11390	0.55	-1.3
3,028,041	-		ABI39_RS11390	0.55	+0.7
3,028,041	-		ABI39_RS11390	0.55	+0.4
3,028,041	-		ABI39_RS11390	0.55	+0.2
3,028,049	+		ABI39_RS11390	0.56	-1.9
3,028,050	-		ABI39_RS11390	0.56	-1.7
3,028,050	-		ABI39_RS11390	0.56	-1.6
3,028,195	+		ABI39_RS11390	0.66	+1.4
3,028,196	-		ABI39_RS11390	0.66	-0.7
3,028,280	+		ABI39_RS11390	0.72	-2.1
3,028,301	+		ABI39_RS11390	0.74	-2.7
3,028,302	-		ABI39_RS11390	0.74	-0.2
3,028,409	+		ABI39_RS11390	0.81	-0.2
3,028,414	-		ABI39_RS11390	0.82	-0.9
3,028,451	-		ABI39_RS11390	0.84	-0.9
3,028,453	-		ABI39_RS11390	0.84	-0.4
3,028,491	+		ABI39_RS11390	0.87	-1.1
3,028,556	+				-1.2
3,028,563	-				-3.5
3,028,577	+				-0.1
3,028,578	-				-0.4
3,028,588	-				+0.1
3,028,725	-				-0.2
3,028,849	+				+1.4
3,028,850	-				-0.5
3,028,926	+				+1.8
3,028,926	+				-2.0
3,028,927	-				-0.7
3,029,002	-		ABI39_RS11395	0.11	-0.4
3,029,015	+		ABI39_RS11395	0.12	+0.9
3,029,037	+		ABI39_RS11395	0.13	-0.1
3,029,082	+		ABI39_RS11395	0.16	-1.0
3,029,083	-		ABI39_RS11395	0.16	-0.2
3,029,093	-		ABI39_RS11395	0.17	-0.6
3,029,192	-		ABI39_RS11395	0.23	+0.5
3,029,544	-		ABI39_RS11395	0.44	-2.1
3,029,550	+		ABI39_RS11395	0.45	+0.8
3,029,551	-		ABI39_RS11395	0.45	-1.3
3,029,564	+		ABI39_RS11395	0.45	-2.5
3,029,592	+		ABI39_RS11395	0.47	-0.6
3,029,596	-		ABI39_RS11395	0.47	-2.3