Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10530

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
2,810,557	-		ABI39_RS10525	0.15	+0.1
2,810,578	+		ABI39_RS10525	0.17	+1.2
2,810,578	+		ABI39_RS10525	0.17	+0.8
2,810,618	+		ABI39_RS10525	0.20	+0.4
2,810,646	+		ABI39_RS10525	0.23	-0.1
2,810,852	-		ABI39_RS10525	0.40	+0.1
2,810,922	+		ABI39_RS10525	0.46	+0.9
2,810,938	+		ABI39_RS10525	0.48	-2.0
2,811,008	-		ABI39_RS10525	0.54	+0.2
2,811,064	+		ABI39_RS10525	0.58	-0.4
2,811,088	+		ABI39_RS10525	0.60	-0.3
2,811,156	-		ABI39_RS10525	0.66	+1.1
2,811,220	+		ABI39_RS10525	0.72	-0.3
2,811,221	-		ABI39_RS10525	0.72	+1.0
2,811,260	-		ABI39_RS10525	0.75	-0.5
2,811,341	+		ABI39_RS10525	0.82	+0.2
2,811,409	+		ABI39_RS10525	0.88	-0.8
2,811,409	+		ABI39_RS10525	0.88	-1.2
2,811,496	+				+0.4
2,811,541	-				+1.1
2,811,542	-				-1.5
2,811,543	-				-0.8
2,811,546	+				+0.8
2,811,750	-		ABI39_RS10530	0.20	-2.1
2,811,913	-		ABI39_RS10530	0.36	+1.3
2,811,920	+		ABI39_RS10530	0.37	+1.4
2,811,921	-		ABI39_RS10530	0.37	+0.7
2,811,926	-		ABI39_RS10530	0.37	+0.2
2,811,929	+		ABI39_RS10530	0.37	-0.4
2,811,930	-		ABI39_RS10530	0.38	+0.8
2,811,962	-		ABI39_RS10530	0.41	-0.9
2,812,044	+		ABI39_RS10530	0.49	-0.3
2,812,049	-		ABI39_RS10530	0.49	+0.9
2,812,223	-		ABI39_RS10530	0.67	+0.4
2,812,345	+		ABI39_RS10530	0.79	-0.1
2,812,345	+		ABI39_RS10530	0.79	+0.3
2,812,352	+		ABI39_RS10530	0.80	-0.2
2,812,429	+		ABI39_RS10530	0.87	-0.5
2,812,434	+		ABI39_RS10530	0.88	+1.5
2,812,434	+		ABI39_RS10530	0.88	+0.4
2,812,509	-				+0.4
2,812,527	+				+0.4
2,812,666	-				+1.3
2,812,769	+		ABI39_RS10535	0.16	+0.3
2,812,811	+		ABI39_RS10535	0.21	+0.1
2,812,812	-		ABI39_RS10535	0.21	+1.7
2,812,813	+		ABI39_RS10535	0.21	+1.8
2,812,813	+		ABI39_RS10535	0.21	+0.8
2,812,814	-		ABI39_RS10535	0.21	+0.2
2,812,815	+		ABI39_RS10535	0.21	+0.3
2,812,816	-		ABI39_RS10535	0.21	+1.4
2,812,850	+		ABI39_RS10535	0.25	-0.6
2,812,903	+		ABI39_RS10535	0.30	-0.3
2,812,904	-		ABI39_RS10535	0.30	+1.0
2,813,005	+		ABI39_RS10535	0.41	-1.1
2,813,056	+		ABI39_RS10535	0.46	+1.0
2,813,087	+		ABI39_RS10535	0.50	-1.4
2,813,255	+		ABI39_RS10535	0.67	+0.3
2,813,255	+		ABI39_RS10535	0.67	+1.0
2,813,255	+		ABI39_RS10535	0.67	+1.2
2,813,341	+		ABI39_RS10535	0.76	-2.8
2,813,390	-		ABI39_RS10535	0.81	+1.0
2,813,435	+		ABI39_RS10535	0.86	+0.1
2,813,451	+		ABI39_RS10535	0.88	+0.9