Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS08620

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
2,300,394	+		ABI39_RS08615	0.16	+0.5
2,300,408	-		ABI39_RS08615	0.18	-1.9
2,300,647	+		ABI39_RS08615	0.42	+1.6
2,300,676	-		ABI39_RS08615	0.45	-0.6
2,300,690	+		ABI39_RS08615	0.47	+2.5
2,300,702	+		ABI39_RS08615	0.48	-2.1
2,300,866	+		ABI39_RS08615	0.65	-0.5
2,300,928	-		ABI39_RS08615	0.71	-2.4
2,300,937	-		ABI39_RS08615	0.72	+0.8
2,300,946	-		ABI39_RS08615	0.73	+0.3
2,300,948	+		ABI39_RS08615	0.73	+0.1
2,300,948	+		ABI39_RS08615	0.73	+0.2
2,300,948	+		ABI39_RS08615	0.73	-2.2
2,301,134	-				-0.2
2,301,187	-				+0.9
2,301,224	+				+0.6
2,301,326	+		ABI39_RS08620	0.11	-0.8
2,301,327	-		ABI39_RS08620	0.11	-1.5
2,301,327	-		ABI39_RS08620	0.11	-0.0
2,301,532	-		ABI39_RS08620	0.46	-0.1
2,301,533	+		ABI39_RS08620	0.46	+0.1
2,301,612	-		ABI39_RS08620	0.60	-1.9
2,301,648	-		ABI39_RS08620	0.66	+1.1
2,301,672	+		ABI39_RS08620	0.70	-1.6
2,301,850	+				-0.8
2,301,850	+				-0.7
2,301,884	+				+0.1
2,301,912	-				+1.9
2,301,925	-				-0.6
2,301,949	+				+0.7
2,301,958	-				+0.6
2,302,054	-				-0.2
2,302,085	+				-0.2
2,302,088	-				-0.1
2,302,107	+				-0.3
2,302,231	+		ABI39_RS08625	0.13	-0.3
2,302,232	-		ABI39_RS08625	0.13	-2.0
2,302,232	-		ABI39_RS08625	0.13	-0.7
2,302,341	+		ABI39_RS08625	0.20	-1.1
2,302,348	-		ABI39_RS08625	0.20	+0.7
2,302,724	-		ABI39_RS08625	0.43	+0.1