Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06330

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
1,754,394	+				-1.4
1,754,450	+				+2.3
1,754,451	-				+1.7
1,754,453	-				+1.0
1,754,605	+		ABI39_RS06330	0.24	+1.9
1,754,605	+		ABI39_RS06330	0.24	+2.1
1,754,760	-		ABI39_RS06330	0.41	-0.4
1,754,760	-		ABI39_RS06330	0.41	+0.3
1,754,760	-		ABI39_RS06330	0.41	+1.2
1,754,762	-		ABI39_RS06330	0.41	+1.5
1,754,864	-		ABI39_RS06330	0.52	+0.1
1,754,985	-		ABI39_RS06330	0.65	+2.3
1,754,986	+		ABI39_RS06330	0.65	+2.8
1,754,987	-		ABI39_RS06330	0.65	-0.1
1,754,987	-		ABI39_RS06330	0.65	+2.1
1,754,987	-		ABI39_RS06330	0.65	+2.6
1,755,023	-		ABI39_RS06330	0.69	+1.8
1,755,052	+		ABI39_RS06330	0.72	+0.6
1,755,052	+		ABI39_RS06330	0.72	+1.5
1,755,118	+		ABI39_RS06330	0.80	+1.5
1,755,140	-		ABI39_RS06330	0.82	+1.4
1,755,264	+				-1.2
1,755,346	+				+0.3
1,755,383	+				-1.1
1,755,383	+				+1.2
1,755,461	-				-1.8
1,755,528	+				-0.1
1,755,537	-				-0.5
1,755,722	-		ABI39_RS06335	0.17	+1.1
1,755,784	+		ABI39_RS06335	0.21	-1.0
1,755,851	-		ABI39_RS06335	0.26	+0.5
1,755,920	+		ABI39_RS06335	0.30	+0.5
1,755,921	-		ABI39_RS06335	0.30	-0.1
1,755,951	+		ABI39_RS06335	0.32	-0.8
1,755,952	-		ABI39_RS06335	0.32	-1.2
1,755,953	+		ABI39_RS06335	0.32	-0.9
1,755,953	+		ABI39_RS06335	0.32	+1.2
1,756,067	-		ABI39_RS06335	0.40	+0.4
1,756,133	+		ABI39_RS06335	0.44	-1.3
1,756,134	-		ABI39_RS06335	0.44	+1.0
1,756,175	-		ABI39_RS06335	0.47	-0.3
1,756,175	-		ABI39_RS06335	0.47	+0.1
1,756,180	-		ABI39_RS06335	0.47	+0.1
1,756,237	+		ABI39_RS06335	0.51	+0.1
1,756,238	-		ABI39_RS06335	0.51	+0.7
1,756,242	-		ABI39_RS06335	0.51	-0.5