Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03035 and ABI39_RS03040 are separated by 7 nucleotides ABI39_RS03040 and ABI39_RS03045 are separated by 25 nucleotides ABI39_RS03045 and ABI39_RS03050 are separated by 115 nucleotides
ABI39_RS03035: ABI39_RS03035 - AraC family transcriptional regulator, at 886,538 to 887,458
_RS03035
ABI39_RS03040: ABI39_RS03040 - lytic transglycosylase domain-containing protein, at 887,466 to 888,464
_RS03040
ABI39_RS03045: ABI39_RS03045 - ion transporter, at 888,490 to 889,347
_RS03045
ABI39_RS03050: ABI39_RS03050 - DUF4981 domain-containing protein, at 889,463 to 892,558
_RS03050
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1 at 886.497 kb on + strand at 886.498 kb on - strand at 886.544 kb on + strand at 886.576 kb on - strand at 886.722 kb on - strand, within ABI39_RS03035 at 886.734 kb on - strand, within ABI39_RS03035 at 886.768 kb on + strand, within ABI39_RS03035 at 886.788 kb on + strand, within ABI39_RS03035 at 886.793 kb on - strand, within ABI39_RS03035 at 886.897 kb on - strand, within ABI39_RS03035 at 886.998 kb on + strand, within ABI39_RS03035 at 887.166 kb on + strand, within ABI39_RS03035 at 887.167 kb on - strand, within ABI39_RS03035 at 887.235 kb on - strand, within ABI39_RS03035 at 887.329 kb on - strand, within ABI39_RS03035 at 887.333 kb on + strand, within ABI39_RS03035 at 887.347 kb on + strand, within ABI39_RS03035 at 887.413 kb on + strand at 887.476 kb on + strand at 887.516 kb on - strand at 887.552 kb on + strand at 887.576 kb on + strand, within ABI39_RS03040 at 887.577 kb on - strand, within ABI39_RS03040 at 887.583 kb on - strand, within ABI39_RS03040 at 887.587 kb on + strand, within ABI39_RS03040 at 887.599 kb on + strand, within ABI39_RS03040 at 887.785 kb on + strand, within ABI39_RS03040 at 887.825 kb on + strand, within ABI39_RS03040 at 888.021 kb on + strand, within ABI39_RS03040 at 888.024 kb on - strand, within ABI39_RS03040 at 888.378 kb on + strand at 888.415 kb on - strand at 888.415 kb on - strand at 888.457 kb on + strand at 888.457 kb on + strand at 888.519 kb on + strand at 888.604 kb on - strand, within ABI39_RS03045 at 888.699 kb on + strand, within ABI39_RS03045 at 888.751 kb on - strand, within ABI39_RS03045 at 888.800 kb on + strand, within ABI39_RS03045 at 888.835 kb on + strand, within ABI39_RS03045 at 889.005 kb on - strand, within ABI39_RS03045 at 889.013 kb on - strand, within ABI39_RS03045 at 889.034 kb on - strand, within ABI39_RS03045 at 889.125 kb on - strand, within ABI39_RS03045 at 889.209 kb on + strand, within ABI39_RS03045 at 889.277 kb on - strand at 889.329 kb on + strand at 889.330 kb on - strand at 889.330 kb on - strand at 889.382 kb on + strand at 889.456 kb on + strand at 889.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood; autoclaved 2.5 mg/ml (C) remove 886,497 + +0.1 886,498 - -1.3 886,544 + +0.1 886,576 - -1.3 886,722 - ABI39_RS03035 0.20 +0.8 886,734 - ABI39_RS03035 0.21 +1.1 886,768 + ABI39_RS03035 0.25 -0.3 886,788 + ABI39_RS03035 0.27 +1.3 886,793 - ABI39_RS03035 0.28 -0.3 886,897 - ABI39_RS03035 0.39 -2.1 886,998 + ABI39_RS03035 0.50 +0.9 887,166 + ABI39_RS03035 0.68 -0.1 887,167 - ABI39_RS03035 0.68 +0.2 887,235 - ABI39_RS03035 0.76 -1.0 887,329 - ABI39_RS03035 0.86 +0.2 887,333 + ABI39_RS03035 0.86 -1.1 887,347 + ABI39_RS03035 0.88 -0.8 887,413 + -0.9 887,476 + -0.3 887,516 - +0.5 887,552 + +0.5 887,576 + ABI39_RS03040 0.11 -0.7 887,577 - ABI39_RS03040 0.11 -0.5 887,583 - ABI39_RS03040 0.12 +0.6 887,587 + ABI39_RS03040 0.12 -0.7 887,599 + ABI39_RS03040 0.13 -0.1 887,785 + ABI39_RS03040 0.32 -0.2 887,825 + ABI39_RS03040 0.36 -1.8 888,021 + ABI39_RS03040 0.56 -1.2 888,024 - ABI39_RS03040 0.56 -1.1 888,378 + -2.6 888,415 - +0.4 888,415 - -0.5 888,457 + -0.6 888,457 + +0.1 888,519 + +0.7 888,604 - ABI39_RS03045 0.13 -0.5 888,699 + ABI39_RS03045 0.24 -0.3 888,751 - ABI39_RS03045 0.30 +0.9 888,800 + ABI39_RS03045 0.36 -0.3 888,835 + ABI39_RS03045 0.40 +0.4 889,005 - ABI39_RS03045 0.60 -0.0 889,013 - ABI39_RS03045 0.61 +0.5 889,034 - ABI39_RS03045 0.63 -0.1 889,125 - ABI39_RS03045 0.74 +1.2 889,209 + ABI39_RS03045 0.84 +0.4 889,277 - +1.0 889,329 + +1.3 889,330 - +1.0 889,330 - -0.5 889,382 + -0.6 889,456 + -0.0 889,457 - -1.4
Or see this region's nucleotide sequence