Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00685

Experiment: Xylan from Beechwood; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00680 and ABI39_RS00685 are separated by 15 nucleotidesABI39_RS00685 and ABI39_RS00690 are separated by 133 nucleotides ABI39_RS00680: ABI39_RS00680 - hypothetical protein, at 204,480 to 207,299 _RS00680 ABI39_RS00685: ABI39_RS00685 - hypothetical protein, at 207,315 to 208,916 _RS00685 ABI39_RS00690: ABI39_RS00690 - glycoside hydrolase family 3 C-terminal domain-containing protein, at 209,050 to 211,416 _RS00690 Position (kb) 207 208 209Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 206.370 kb on + strand, within ABI39_RS00680at 206.433 kb on - strand, within ABI39_RS00680at 206.666 kb on + strand, within ABI39_RS00680at 206.677 kb on + strand, within ABI39_RS00680at 206.704 kb on - strand, within ABI39_RS00680at 206.712 kb on - strand, within ABI39_RS00680at 206.725 kb on - strand, within ABI39_RS00680at 206.770 kb on + strand, within ABI39_RS00680at 206.775 kb on + strand, within ABI39_RS00680at 206.846 kb on + strand, within ABI39_RS00680at 206.856 kb on - strand, within ABI39_RS00680at 206.954 kb on - strand, within ABI39_RS00680at 206.954 kb on - strand, within ABI39_RS00680at 206.973 kb on - strand, within ABI39_RS00680at 207.072 kb on - strandat 207.072 kb on - strandat 207.119 kb on + strandat 207.226 kb on - strandat 207.240 kb on + strandat 207.241 kb on - strandat 207.249 kb on - strandat 207.300 kb on - strandat 207.316 kb on + strandat 207.540 kb on - strand, within ABI39_RS00685at 207.579 kb on - strand, within ABI39_RS00685at 207.644 kb on + strand, within ABI39_RS00685at 207.984 kb on + strand, within ABI39_RS00685at 207.984 kb on + strand, within ABI39_RS00685at 208.006 kb on + strand, within ABI39_RS00685at 208.032 kb on - strand, within ABI39_RS00685at 208.201 kb on + strand, within ABI39_RS00685at 208.211 kb on + strand, within ABI39_RS00685at 208.272 kb on + strand, within ABI39_RS00685at 208.296 kb on - strand, within ABI39_RS00685at 208.325 kb on + strand, within ABI39_RS00685at 208.326 kb on - strand, within ABI39_RS00685at 208.405 kb on - strand, within ABI39_RS00685at 208.460 kb on + strand, within ABI39_RS00685at 208.474 kb on + strand, within ABI39_RS00685at 208.486 kb on + strand, within ABI39_RS00685at 208.486 kb on + strand, within ABI39_RS00685at 208.521 kb on - strand, within ABI39_RS00685at 208.524 kb on + strand, within ABI39_RS00685at 208.550 kb on + strand, within ABI39_RS00685at 208.550 kb on + strand, within ABI39_RS00685at 208.550 kb on + strand, within ABI39_RS00685at 208.644 kb on + strand, within ABI39_RS00685at 208.645 kb on - strand, within ABI39_RS00685at 208.750 kb on - strand, within ABI39_RS00685at 208.780 kb on + strandat 208.869 kb on - strandat 208.876 kb on - strandat 208.975 kb on + strandat 208.976 kb on - strandat 209.024 kb on - strandat 209.024 kb on - strandat 209.032 kb on - strandat 209.070 kb on + strandat 209.113 kb on - strandat 209.211 kb on - strandat 209.351 kb on + strand, within ABI39_RS00690at 209.352 kb on - strand, within ABI39_RS00690at 209.352 kb on - strand, within ABI39_RS00690at 209.635 kb on + strand, within ABI39_RS00690at 209.636 kb on - strand, within ABI39_RS00690at 209.643 kb on + strand, within ABI39_RS00690at 209.692 kb on + strand, within ABI39_RS00690at 209.843 kb on + strand, within ABI39_RS00690at 209.844 kb on + strand, within ABI39_RS00690at 209.867 kb on + strand, within ABI39_RS00690at 209.871 kb on + strand, within ABI39_RS00690at 209.871 kb on + strand, within ABI39_RS00690at 209.872 kb on - strand, within ABI39_RS00690at 209.873 kb on + strand, within ABI39_RS00690

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
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206,370 + ABI39_RS00680 0.67 +1.2
206,433 - ABI39_RS00680 0.69 +1.1
206,666 + ABI39_RS00680 0.78 +0.3
206,677 + ABI39_RS00680 0.78 +0.3
206,704 - ABI39_RS00680 0.79 +0.9
206,712 - ABI39_RS00680 0.79 -0.6
206,725 - ABI39_RS00680 0.80 +0.7
206,770 + ABI39_RS00680 0.81 -0.5
206,775 + ABI39_RS00680 0.81 +0.8
206,846 + ABI39_RS00680 0.84 -0.1
206,856 - ABI39_RS00680 0.84 +0.5
206,954 - ABI39_RS00680 0.88 +0.3
206,954 - ABI39_RS00680 0.88 -0.1
206,973 - ABI39_RS00680 0.88 -0.4
207,072 - -2.5
207,072 - -0.5
207,119 + -0.0
207,226 - +0.9
207,240 + +1.5
207,241 - +0.6
207,249 - +0.7
207,300 - +0.6
207,316 + +0.2
207,540 - ABI39_RS00685 0.14 +1.0
207,579 - ABI39_RS00685 0.16 -0.5
207,644 + ABI39_RS00685 0.21 +0.7
207,984 + ABI39_RS00685 0.42 -2.8
207,984 + ABI39_RS00685 0.42 +0.5
208,006 + ABI39_RS00685 0.43 +1.2
208,032 - ABI39_RS00685 0.45 +0.2
208,201 + ABI39_RS00685 0.55 -0.8
208,211 + ABI39_RS00685 0.56 -0.0
208,272 + ABI39_RS00685 0.60 -0.0
208,296 - ABI39_RS00685 0.61 +0.8
208,325 + ABI39_RS00685 0.63 -0.2
208,326 - ABI39_RS00685 0.63 +0.4
208,405 - ABI39_RS00685 0.68 +1.3
208,460 + ABI39_RS00685 0.71 -0.1
208,474 + ABI39_RS00685 0.72 +0.3
208,486 + ABI39_RS00685 0.73 +0.6
208,486 + ABI39_RS00685 0.73 -0.4
208,521 - ABI39_RS00685 0.75 -4.1
208,524 + ABI39_RS00685 0.75 -0.7
208,550 + ABI39_RS00685 0.77 +1.3
208,550 + ABI39_RS00685 0.77 +1.0
208,550 + ABI39_RS00685 0.77 +0.5
208,644 + ABI39_RS00685 0.83 +0.9
208,645 - ABI39_RS00685 0.83 +0.3
208,750 - ABI39_RS00685 0.90 +0.6
208,780 + -0.5
208,869 - +0.6
208,876 - -0.4
208,975 + +0.5
208,976 - +0.3
209,024 - -1.9
209,024 - +0.6
209,032 - -0.6
209,070 + +1.1
209,113 - +0.8
209,211 - -0.5
209,351 + ABI39_RS00690 0.13 +0.5
209,352 - ABI39_RS00690 0.13 +0.2
209,352 - ABI39_RS00690 0.13 +0.2
209,635 + ABI39_RS00690 0.25 +0.7
209,636 - ABI39_RS00690 0.25 +0.4
209,643 + ABI39_RS00690 0.25 +1.1
209,692 + ABI39_RS00690 0.27 -2.2
209,843 + ABI39_RS00690 0.34 +0.9
209,844 + ABI39_RS00690 0.34 +0.9
209,867 + ABI39_RS00690 0.35 +0.8
209,871 + ABI39_RS00690 0.35 +0.3
209,871 + ABI39_RS00690 0.35 -0.9
209,872 - ABI39_RS00690 0.35 -0.1
209,873 + ABI39_RS00690 0.35 -1.0

Or see this region's nucleotide sequence