Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS22275 and ABI39_RS16005 are separated by 12 nucleotides ABI39_RS16005 and ABI39_RS16010 overlap by 11 nucleotides ABI39_RS16010 and ABI39_RS22820 are separated by 12 nucleotides ABI39_RS22820 and ABI39_RS16020 are separated by 439 nucleotides
ABI39_RS22275: ABI39_RS22275 - hypothetical protein, at 4,098,927 to 4,104,386
_RS22275
ABI39_RS16005: ABI39_RS16005 - hypothetical protein, at 4,104,399 to 4,104,692
_RS16005
ABI39_RS16010: ABI39_RS16010 - hypothetical protein, at 4,104,682 to 4,104,906
_RS16010
ABI39_RS22820: ABI39_RS22820 - hypothetical protein, at 4,104,919 to 4,105,203
_RS22820
ABI39_RS16020: ABI39_RS16020 - hypothetical protein, at 4,105,643 to 4,106,023
_RS16020
Position (kb) 4104
4105
4106 Strain fitness (log2 ratio) -2
-1
0
1 at 4103.923 kb on + strand at 4103.924 kb on - strand at 4104.018 kb on + strand at 4104.061 kb on - strand at 4104.170 kb on + strand at 4104.218 kb on - strand at 4104.299 kb on - strand at 4104.330 kb on + strand at 4104.331 kb on - strand at 4104.347 kb on + strand at 4104.348 kb on - strand at 4104.392 kb on - strand at 4104.429 kb on + strand, within ABI39_RS16005 at 4104.440 kb on - strand, within ABI39_RS16005 at 4104.474 kb on + strand, within ABI39_RS16005 at 4104.476 kb on + strand, within ABI39_RS16005 at 4104.476 kb on + strand, within ABI39_RS16005 at 4104.476 kb on + strand, within ABI39_RS16005 at 4104.496 kb on - strand, within ABI39_RS16005 at 4104.498 kb on - strand, within ABI39_RS16005 at 4104.662 kb on + strand, within ABI39_RS16005 at 4104.772 kb on + strand, within ABI39_RS16010 at 4104.772 kb on + strand, within ABI39_RS16010 at 4104.773 kb on - strand, within ABI39_RS16010 at 4104.916 kb on - strand at 4104.989 kb on + strand, within ABI39_RS22820 at 4105.282 kb on - strand at 4105.282 kb on - strand at 4105.346 kb on - strand at 4105.347 kb on + strand at 4105.348 kb on - strand at 4105.348 kb on - strand at 4105.351 kb on + strand at 4105.351 kb on + strand at 4105.433 kb on - strand at 4105.637 kb on + strand at 4105.649 kb on + strand at 4105.700 kb on + strand, within ABI39_RS16020 at 4105.701 kb on - strand, within ABI39_RS16020 at 4105.701 kb on - strand, within ABI39_RS16020 at 4105.754 kb on - strand, within ABI39_RS16020 at 4105.754 kb on - strand, within ABI39_RS16020 at 4105.757 kb on + strand, within ABI39_RS16020 at 4105.758 kb on - strand, within ABI39_RS16020 at 4105.772 kb on + strand, within ABI39_RS16020 at 4105.784 kb on - strand, within ABI39_RS16020 at 4105.784 kb on - strand, within ABI39_RS16020 at 4105.856 kb on + strand, within ABI39_RS16020 at 4105.878 kb on - strand, within ABI39_RS16020 at 4105.922 kb on + strand, within ABI39_RS16020 at 4106.044 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 4,103,923 + -0.3 4,103,924 - -0.8 4,104,018 + +0.1 4,104,061 - -1.0 4,104,170 + -0.5 4,104,218 - -0.2 4,104,299 - -1.2 4,104,330 + +0.5 4,104,331 - +0.2 4,104,347 + -0.1 4,104,348 - -0.8 4,104,392 - +0.3 4,104,429 + ABI39_RS16005 0.10 +0.5 4,104,440 - ABI39_RS16005 0.14 -0.5 4,104,474 + ABI39_RS16005 0.26 -0.1 4,104,476 + ABI39_RS16005 0.26 +0.2 4,104,476 + ABI39_RS16005 0.26 -0.5 4,104,476 + ABI39_RS16005 0.26 -0.1 4,104,496 - ABI39_RS16005 0.33 +0.9 4,104,498 - ABI39_RS16005 0.34 -0.7 4,104,662 + ABI39_RS16005 0.89 -0.1 4,104,772 + ABI39_RS16010 0.40 +0.0 4,104,772 + ABI39_RS16010 0.40 -0.4 4,104,773 - ABI39_RS16010 0.40 -1.8 4,104,916 - -0.2 4,104,989 + ABI39_RS22820 0.25 +0.1 4,105,282 - -0.4 4,105,282 - -1.3 4,105,346 - -0.1 4,105,347 + -1.1 4,105,348 - +0.4 4,105,348 - -0.4 4,105,351 + -0.7 4,105,351 + -0.7 4,105,433 - -0.3 4,105,637 + -0.3 4,105,649 + -2.0 4,105,700 + ABI39_RS16020 0.15 +0.6 4,105,701 - ABI39_RS16020 0.15 +0.1 4,105,701 - ABI39_RS16020 0.15 -1.6 4,105,754 - ABI39_RS16020 0.29 -0.8 4,105,754 - ABI39_RS16020 0.29 -1.0 4,105,757 + ABI39_RS16020 0.30 -0.3 4,105,758 - ABI39_RS16020 0.30 -0.9 4,105,772 + ABI39_RS16020 0.34 +0.6 4,105,784 - ABI39_RS16020 0.37 -0.2 4,105,784 - ABI39_RS16020 0.37 -0.4 4,105,856 + ABI39_RS16020 0.56 +0.0 4,105,878 - ABI39_RS16020 0.62 -0.1 4,105,922 + ABI39_RS16020 0.73 -1.5 4,106,044 + +0.5
Or see this region's nucleotide sequence