Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09065

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 2.5 mg/ml (C)
2,425,389	-		ABI39_RS09060	0.18	-0.5
2,425,405	-		ABI39_RS09060	0.19	+0.1
2,425,451	-		ABI39_RS09060	0.24	-0.3
2,425,451	-		ABI39_RS09060	0.24	-0.4
2,425,533	-		ABI39_RS09060	0.33	+0.3
2,425,620	+		ABI39_RS09060	0.42	-1.0
2,425,682	-		ABI39_RS09060	0.49	+1.0
2,425,861	+		ABI39_RS09060	0.67	+0.2
2,425,905	-		ABI39_RS09060	0.72	-0.4
2,425,935	-		ABI39_RS09060	0.75	-0.2
2,425,936	+		ABI39_RS09060	0.75	+1.2
2,425,948	-		ABI39_RS09060	0.77	+0.1
2,425,969	+		ABI39_RS09060	0.79	-1.2
2,425,970	-		ABI39_RS09060	0.79	-2.1
2,426,029	+		ABI39_RS09060	0.85	+1.0
2,426,313	+				-0.4
2,426,315	+				-0.1
2,426,366	+				-1.2
2,426,388	+				-1.8
2,426,406	-				-0.2
2,426,547	+				+0.6
2,426,602	-				-0.3
2,426,670	-				+0.7
2,426,901	+		ABI39_RS09065	0.16	-0.1
2,426,929	-		ABI39_RS09065	0.17	-0.8
2,427,067	-		ABI39_RS09065	0.21	+0.9
2,427,100	+		ABI39_RS09065	0.22	-1.4
2,427,105	+		ABI39_RS09065	0.22	-0.1
2,427,106	-		ABI39_RS09065	0.22	+0.3
2,427,110	-		ABI39_RS09065	0.22	-2.7
2,427,113	-		ABI39_RS09065	0.22	+0.9
2,427,167	+		ABI39_RS09065	0.24	+0.8
2,427,167	+		ABI39_RS09065	0.24	+0.8
2,427,167	+		ABI39_RS09065	0.24	+0.7
2,427,167	+		ABI39_RS09065	0.24	-1.2
2,427,169	+		ABI39_RS09065	0.24	+1.0
2,427,171	+		ABI39_RS09065	0.24	-0.2
2,427,174	+		ABI39_RS09065	0.24	+0.8
2,427,185	-		ABI39_RS09065	0.25	-0.5
2,427,208	+		ABI39_RS09065	0.25	-1.6
2,427,271	+		ABI39_RS09065	0.27	-2.0
2,427,291	+		ABI39_RS09065	0.28	+0.6
2,427,341	+		ABI39_RS09065	0.29	-0.1
2,427,369	+		ABI39_RS09065	0.30	-1.0
2,427,391	+		ABI39_RS09065	0.31	-0.3
2,427,512	+		ABI39_RS09065	0.35	+0.2
2,427,519	+		ABI39_RS09065	0.35	-0.0
2,427,677	+		ABI39_RS09065	0.40	-0.4
2,427,714	-		ABI39_RS09065	0.41	-0.6
2,427,729	+		ABI39_RS09065	0.41	-1.0
2,427,762	-		ABI39_RS09065	0.42	-0.8
2,427,819	+		ABI39_RS09065	0.44	-0.8
2,427,819	+		ABI39_RS09065	0.44	-0.8
2,427,819	+		ABI39_RS09065	0.44	-0.6
2,427,820	-		ABI39_RS09065	0.44	+0.3
2,427,887	+		ABI39_RS09065	0.46	-0.1
2,427,910	-		ABI39_RS09065	0.47	+0.8
2,427,969	-		ABI39_RS09065	0.49	-0.2
2,427,978	-		ABI39_RS09065	0.49	+0.2
2,428,027	-		ABI39_RS09065	0.51	+0.4
2,428,027	-		ABI39_RS09065	0.51	-0.4
2,428,070	+		ABI39_RS09065	0.52	+0.3
2,428,074	+		ABI39_RS09065	0.52	-0.7
2,428,092	-		ABI39_RS09065	0.53	+0.1
2,428,092	-		ABI39_RS09065	0.53	-1.8
2,428,114	+		ABI39_RS09065	0.53	+1.3
2,428,318	-		ABI39_RS09065	0.60	-0.3
2,428,363	-		ABI39_RS09065	0.61	+0.2
2,428,390	+		ABI39_RS09065	0.62	+0.2
2,428,395	-		ABI39_RS09065	0.62	-0.9
2,428,437	+		ABI39_RS09065	0.63	+0.3
2,428,441	-		ABI39_RS09065	0.64	+1.0
2,428,495	-		ABI39_RS09065	0.65	-0.4
2,428,665	-		ABI39_RS09065	0.70	-0.7
2,428,665	-		ABI39_RS09065	0.70	-0.6
2,428,675	+		ABI39_RS09065	0.71	-1.6
2,428,729	-		ABI39_RS09065	0.72	+0.3
2,428,774	+		ABI39_RS09065	0.74	-0.6
2,428,782	+		ABI39_RS09065	0.74	-1.9
2,428,809	+		ABI39_RS09065	0.75	+0.3
2,428,810	-		ABI39_RS09065	0.75	-1.2
2,428,842	+		ABI39_RS09065	0.76	-0.1
2,428,842	+		ABI39_RS09065	0.76	-0.0
2,428,842	+		ABI39_RS09065	0.76	+0.7
2,428,843	-		ABI39_RS09065	0.76	+0.1
2,428,843	-		ABI39_RS09065	0.76	-0.9
2,428,981	-		ABI39_RS09065	0.80	-0.9
2,428,992	+		ABI39_RS09065	0.81	-0.1
2,429,058	+		ABI39_RS09065	0.83	+0.9
2,429,059	-		ABI39_RS09065	0.83	-1.8
2,429,115	+		ABI39_RS09065	0.84	+0.2
2,429,141	-		ABI39_RS09065	0.85	-0.5
2,429,230	+		ABI39_RS09065	0.88	-1.5
2,429,245	-		ABI39_RS09065	0.88	+0.0
2,429,311	+				+0.7
2,429,349	+				-0.9
2,429,396	+				+0.5
2,429,404	-				+0.5
2,429,514	-				-0.1
2,429,532	+				-1.5
2,429,555	-				-0.8
2,429,590	+				-0.7
2,429,654	-				+0.9
2,429,791	+				-1.8
2,429,873	+		ABI39_RS09070	0.12	-2.6
2,429,944	-		ABI39_RS09070	0.15	+1.4
2,429,947	+		ABI39_RS09070	0.15	+0.3
2,429,948	-		ABI39_RS09070	0.15	-0.3
2,429,991	+		ABI39_RS09070	0.17	-0.2
2,430,110	-		ABI39_RS09070	0.23	+1.1
2,430,126	+		ABI39_RS09070	0.23	-0.5
2,430,126	+		ABI39_RS09070	0.23	-0.3
2,430,228	+		ABI39_RS09070	0.28	+1.5
2,430,239	+		ABI39_RS09070	0.29	+0.8
2,430,239	+		ABI39_RS09070	0.29	+1.5
2,430,239	+		ABI39_RS09070	0.29	+0.7
2,430,404	+		ABI39_RS09070	0.36	-0.5
2,430,404	+		ABI39_RS09070	0.36	+1.0
2,430,472	-		ABI39_RS09070	0.39	+1.4
2,430,517	-		ABI39_RS09070	0.42	-0.9
2,430,606	+		ABI39_RS09070	0.46	+1.3
2,430,613	-		ABI39_RS09070	0.46	+2.2