Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04070

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 2.5 mg/ml (C)
1,149,504	-				-0.5
1,149,515	+				+0.0
1,149,528	-				-0.1
1,149,528	-				+1.3
1,149,597	+		ABI39_RS04065	0.11	-2.6
1,149,759	-		ABI39_RS04065	0.28	+0.7
1,149,931	-		ABI39_RS04065	0.45	+0.7
1,149,932	+		ABI39_RS04065	0.45	-1.1
1,149,977	-		ABI39_RS04065	0.49	-0.1
1,150,052	+		ABI39_RS04065	0.57	-0.5
1,150,067	+		ABI39_RS04065	0.58	+0.9
1,150,067	+		ABI39_RS04065	0.58	-0.2
1,150,068	-		ABI39_RS04065	0.59	+1.0
1,150,233	-		ABI39_RS04065	0.75	-0.7
1,150,326	-		ABI39_RS04065	0.84	+0.5
1,150,327	+		ABI39_RS04065	0.84	+0.5
1,150,405	+				+0.8
1,150,443	+				+0.3
1,150,445	+				-0.9
1,150,447	+				+1.6
1,150,448	-				+0.3
1,150,448	-				+0.2
1,150,448	-				+0.7
1,150,466	+				+0.5
1,150,467	-				-0.4
1,150,487	+				+0.2
1,150,713	+				-0.1
1,150,714	-				+0.9
1,150,715	+				-0.3
1,150,887	+		ABI39_RS04070	0.17	+0.5
1,150,920	+		ABI39_RS04070	0.18	-1.3
1,150,965	+		ABI39_RS04070	0.20	-0.1
1,150,980	-		ABI39_RS04070	0.20	+1.3
1,150,982	+		ABI39_RS04070	0.20	+0.5
1,150,990	-		ABI39_RS04070	0.21	+0.9
1,150,990	-		ABI39_RS04070	0.21	-1.5
1,151,088	+		ABI39_RS04070	0.25	+0.6
1,151,327	-		ABI39_RS04070	0.35	+0.9
1,151,386	-		ABI39_RS04070	0.37	+0.7
1,151,394	-		ABI39_RS04070	0.37	+0.2
1,151,422	+		ABI39_RS04070	0.39	+0.1
1,151,423	-		ABI39_RS04070	0.39	+0.0
1,151,480	-		ABI39_RS04070	0.41	-1.1
1,151,531	-		ABI39_RS04070	0.43	+1.4
1,151,549	-		ABI39_RS04070	0.44	-0.1
1,151,577	-		ABI39_RS04070	0.45	+1.4
1,151,613	-		ABI39_RS04070	0.46	-0.1
1,151,618	+		ABI39_RS04070	0.47	-0.1
1,151,653	-		ABI39_RS04070	0.48	+1.3
1,151,673	-		ABI39_RS04070	0.49	+0.8
1,151,833	+		ABI39_RS04070	0.56	+1.6
1,151,856	+		ABI39_RS04070	0.57	+0.8
1,151,884	-		ABI39_RS04070	0.58	+0.6
1,151,941	-		ABI39_RS04070	0.60	-1.7
1,151,955	-		ABI39_RS04070	0.61	+2.4
1,151,972	-		ABI39_RS04070	0.61	+0.1
1,152,034	-		ABI39_RS04070	0.64	+0.7
1,152,034	-		ABI39_RS04070	0.64	+0.8
1,152,051	-		ABI39_RS04070	0.65	+0.7
1,152,051	-		ABI39_RS04070	0.65	-0.4
1,152,061	-		ABI39_RS04070	0.65	-2.3
1,152,122	+		ABI39_RS04070	0.67	-0.2
1,152,161	+		ABI39_RS04070	0.69	+0.5
1,152,171	-		ABI39_RS04070	0.70	-0.6
1,152,378	-		ABI39_RS04070	0.78	-0.0
1,152,398	+		ABI39_RS04070	0.79	-0.9
1,152,399	-		ABI39_RS04070	0.79	+1.4
1,152,492	+		ABI39_RS04070	0.83	-0.6
1,152,502	-		ABI39_RS04070	0.83	+1.0
1,152,561	+		ABI39_RS04070	0.86	-1.6
1,152,563	+		ABI39_RS04070	0.86	+0.0
1,152,563	+		ABI39_RS04070	0.86	+0.9
1,152,563	+		ABI39_RS04070	0.86	+1.3
1,152,563	+		ABI39_RS04070	0.86	-2.1
1,152,564	-		ABI39_RS04070	0.86	-1.4
1,152,564	-		ABI39_RS04070	0.86	+1.1
1,152,567	+		ABI39_RS04070	0.86	+0.6
1,152,567	+		ABI39_RS04070	0.86	-0.3
1,152,568	-		ABI39_RS04070	0.86	-0.0
1,152,568	-		ABI39_RS04070	0.86	-0.5
1,152,624	+		ABI39_RS04070	0.88	-0.1
1,152,710	+				+0.2
1,152,825	-				-2.3
1,152,858	+				+1.7
1,152,859	-				+0.3
1,152,859	-				+0.9
1,153,053	+				+1.4
1,153,054	-				-0.4
1,153,080	-				+0.4
1,153,080	-				-0.1
1,153,107	-				+1.0
1,153,107	-				-0.1
1,153,127	+				+0.6
1,153,130	-				+0.5
1,153,205	+		ABI39_RS04075	0.12	-0.8
1,153,410	-		ABI39_RS04075	0.20	+0.9
1,153,454	+		ABI39_RS04075	0.22	-0.8
1,153,487	-		ABI39_RS04075	0.23	+0.3
1,153,709	+		ABI39_RS04075	0.33	+1.2
1,153,710	-		ABI39_RS04075	0.33	+1.2
1,153,714	+		ABI39_RS04075	0.33	-0.0
1,153,784	-		ABI39_RS04075	0.36	-1.9
1,153,824	-		ABI39_RS04075	0.37	+1.2