Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS22680

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS07595 and ABI39_RS22680 overlap by 12 nucleotidesABI39_RS22680 and ABI39_RS07600 are separated by 1 nucleotidesABI39_RS07600 and ABI39_RS07605 are separated by 20 nucleotides ABI39_RS07595: ABI39_RS07595 - transposase, at 2,059,875 to 2,061,359 _RS07595 ABI39_RS22680: ABI39_RS22680 - hypothetical protein, at 2,061,348 to 2,061,512 _RS22680 ABI39_RS07600: ABI39_RS07600 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 2,061,514 to 2,062,404 _RS07600 ABI39_RS07605: ABI39_RS07605 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 2,062,425 to 2,063,840 _RS07605 Position (kb) 2061 2062Strain fitness (log2 ratio) -1 0 1at 2061.516 kb on - strandat 2061.529 kb on + strandat 2061.601 kb on - strandat 2061.706 kb on - strand, within ABI39_RS07600at 2061.754 kb on - strand, within ABI39_RS07600at 2061.759 kb on - strand, within ABI39_RS07600at 2061.759 kb on - strand, within ABI39_RS07600at 2061.858 kb on - strand, within ABI39_RS07600at 2062.161 kb on + strand, within ABI39_RS07600at 2062.162 kb on - strand, within ABI39_RS07600at 2062.253 kb on + strand, within ABI39_RS07600at 2062.294 kb on - strand, within ABI39_RS07600at 2062.390 kb on - strandat 2062.391 kb on + strandat 2062.392 kb on - strandat 2062.392 kb on - strandat 2062.394 kb on - strandat 2062.396 kb on - strandat 2062.396 kb on - strandat 2062.431 kb on + strandat 2062.469 kb on + strandat 2062.470 kb on - strandat 2062.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Starch soluble; autoclaved 2.5 mg/ml (C)
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2,061,516 - -1.3
2,061,529 + +0.1
2,061,601 - +0.2
2,061,706 - ABI39_RS07600 0.22 +0.1
2,061,754 - ABI39_RS07600 0.27 -0.2
2,061,759 - ABI39_RS07600 0.27 +0.1
2,061,759 - ABI39_RS07600 0.27 -0.5
2,061,858 - ABI39_RS07600 0.39 -0.3
2,062,161 + ABI39_RS07600 0.73 -1.6
2,062,162 - ABI39_RS07600 0.73 -0.8
2,062,253 + ABI39_RS07600 0.83 -0.8
2,062,294 - ABI39_RS07600 0.88 -1.2
2,062,390 - +1.2
2,062,391 + -0.1
2,062,392 - +0.8
2,062,392 - -0.4
2,062,394 - -0.1
2,062,396 - -0.4
2,062,396 - +1.3
2,062,431 + +0.7
2,062,469 + +0.5
2,062,470 - +0.5
2,062,494 - -0.1

Or see this region's nucleotide sequence