Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18960

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
4,772,391	-		ABI39_RS18955	0.32	-0.6
4,772,397	+		ABI39_RS18955	0.32	+0.5
4,772,411	-		ABI39_RS18955	0.33	-0.6
4,772,461	-		ABI39_RS18955	0.38	+1.1
4,772,532	+		ABI39_RS18955	0.43	+0.5
4,772,572	-		ABI39_RS18955	0.47	+0.6
4,772,640	+		ABI39_RS18955	0.52	-1.0
4,772,640	+		ABI39_RS18955	0.52	-0.4
4,772,641	-		ABI39_RS18955	0.52	+0.3
4,772,641	-		ABI39_RS18955	0.52	+1.1
4,772,642	+		ABI39_RS18955	0.52	-1.3
4,772,762	+		ABI39_RS18955	0.62	-0.4
4,772,763	-		ABI39_RS18955	0.62	-0.3
4,772,838	+		ABI39_RS18955	0.68	-2.2
4,772,890	+		ABI39_RS18955	0.73	-0.1
4,772,891	-		ABI39_RS18955	0.73	-0.1
4,772,915	-		ABI39_RS18955	0.75	+0.7
4,773,046	-		ABI39_RS18955	0.86	-0.1
4,773,056	+		ABI39_RS18955	0.86	-2.3
4,773,247	-				+0.3
4,773,313	-				-1.3
4,773,362	+				+0.7
4,773,363	-				-0.4
4,773,366	+				-0.0
4,773,366	+				+0.4
4,773,367	-				+0.7
4,773,367	-				+1.5
4,773,367	-				+1.6
4,773,367	-				+0.5
4,773,372	-				-1.0
4,773,414	-				+1.5
4,773,644	+		ABI39_RS18960	0.22	+1.7
4,773,674	+		ABI39_RS18960	0.24	+0.7
4,773,701	+		ABI39_RS18960	0.26	+0.7
4,773,749	+		ABI39_RS18960	0.30	+0.9
4,773,809	+		ABI39_RS18960	0.34	+0.6
4,773,810	-		ABI39_RS18960	0.34	+0.5
4,773,810	-		ABI39_RS18960	0.34	-0.1
4,773,829	+		ABI39_RS18960	0.35	+0.5
4,773,982	-		ABI39_RS18960	0.46	-0.6
4,774,022	-		ABI39_RS18960	0.49	-0.0
4,774,024	-		ABI39_RS18960	0.49	-0.0
4,774,120	+		ABI39_RS18960	0.56	-0.6
4,774,120	+		ABI39_RS18960	0.56	-0.2
4,774,121	-		ABI39_RS18960	0.56	+1.0
4,774,121	-		ABI39_RS18960	0.56	-0.7
4,774,177	+		ABI39_RS18960	0.60	+1.1
4,774,194	-		ABI39_RS18960	0.61	+0.1
4,774,239	-		ABI39_RS18960	0.65	+1.1
4,774,311	+		ABI39_RS18960	0.70	+0.8
4,774,312	-		ABI39_RS18960	0.70	+1.2
4,774,447	-		ABI39_RS18960	0.79	-0.1
4,774,470	+		ABI39_RS18960	0.81	+0.6
4,774,576	+		ABI39_RS18960	0.89	+0.4
4,774,628	-				+0.4
4,774,657	-				+0.6
4,774,669	+				+0.7
4,774,951	+				+0.7
4,774,951	+				+0.4
4,775,012	-				-0.8
4,775,016	-				-0.4
4,775,053	-				+0.3
4,775,071	+				+0.1
4,775,306	-		ABI39_RS18965	0.22	+1.6