Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18260

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
4,604,558	-				-0.5
4,604,605	-				-0.7
4,604,675	+				+0.8
4,604,687	-				-1.0
4,604,728	+				-0.1
4,604,728	+				+0.8
4,604,851	+		ABI39_RS18255	0.25	-0.0
4,604,851	+		ABI39_RS18255	0.25	+0.1
4,604,851	+		ABI39_RS18255	0.25	-0.5
4,604,852	-		ABI39_RS18255	0.25	-2.6
4,604,937	+		ABI39_RS18255	0.37	-1.4
4,604,938	-		ABI39_RS18255	0.37	-2.9
4,604,938	-		ABI39_RS18255	0.37	+0.1
4,605,145	+		ABI39_RS18255	0.66	+0.1
4,605,212	+		ABI39_RS18255	0.76	-0.1
4,605,252	-		ABI39_RS18255	0.81	-0.6
4,605,273	-		ABI39_RS18255	0.84	-1.3
4,605,274	+		ABI39_RS18255	0.84	+0.2
4,605,374	-				+0.9
4,605,374	-				-0.1
4,605,467	+		ABI39_RS18260	0.17	+0.1
4,605,467	+		ABI39_RS18260	0.17	-0.8
4,605,540	+		ABI39_RS18260	0.31	-0.4
4,605,541	-		ABI39_RS18260	0.31	+0.5
4,605,631	+		ABI39_RS18260	0.49	-0.1
4,605,778	+		ABI39_RS18260	0.78	+0.1
4,605,913	+				+0.3
4,605,914	-				-2.0
4,605,914	-				-2.4
4,605,921	-				-0.7
4,605,921	-				+1.2
4,606,031	-				+1.8
4,606,073	-				+0.1
4,606,155	-		ABI39_RS18265	0.10	+1.1
4,606,185	+		ABI39_RS18265	0.11	+0.5
4,606,185	+		ABI39_RS18265	0.11	+0.4
4,606,185	+		ABI39_RS18265	0.11	-0.1
4,606,186	-		ABI39_RS18265	0.11	+0.6
4,606,186	-		ABI39_RS18265	0.11	+1.2
4,606,186	-		ABI39_RS18265	0.11	-0.5
4,606,186	-		ABI39_RS18265	0.11	-0.1
4,606,361	-		ABI39_RS18265	0.20	-0.4
4,606,495	+		ABI39_RS18265	0.26	+0.0
4,606,496	-		ABI39_RS18265	0.26	-0.4
4,606,538	-		ABI39_RS18265	0.28	+0.8
4,606,538	-		ABI39_RS18265	0.28	+1.0
4,606,589	+		ABI39_RS18265	0.31	-0.5
4,606,638	+		ABI39_RS18265	0.33	-1.5
4,606,639	-		ABI39_RS18265	0.33	+0.6
4,606,674	+		ABI39_RS18265	0.35	+0.2
4,606,717	+		ABI39_RS18265	0.37	-0.6
4,606,718	-		ABI39_RS18265	0.37	-1.2
4,606,718	-		ABI39_RS18265	0.37	+0.4
4,606,817	+		ABI39_RS18265	0.42	+0.7