Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17040

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
4,315,643	+				+1.0
4,315,685	+		ABI39_RS17035	0.14	+0.3
4,315,686	-		ABI39_RS17035	0.15	+0.5
4,315,686	-		ABI39_RS17035	0.15	+0.9
4,315,704	+		ABI39_RS17035	0.17	+1.0
4,315,718	+		ABI39_RS17035	0.19	-1.3
4,315,719	-		ABI39_RS17035	0.19	+1.3
4,315,808	+		ABI39_RS17035	0.32	+0.7
4,315,808	+		ABI39_RS17035	0.32	-0.3
4,315,808	+		ABI39_RS17035	0.32	+1.4
4,315,809	-		ABI39_RS17035	0.32	+0.2
4,315,825	+		ABI39_RS17035	0.34	-1.0
4,315,826	-		ABI39_RS17035	0.34	-0.3
4,315,878	-		ABI39_RS17035	0.42	+0.0
4,315,880	+		ABI39_RS17035	0.42	-0.8
4,315,922	-		ABI39_RS17035	0.48	+0.8
4,315,955	+		ABI39_RS17035	0.53	+0.6
4,315,958	-		ABI39_RS17035	0.53	-0.0
4,316,006	+		ABI39_RS17035	0.60	+0.3
4,316,035	-		ABI39_RS17035	0.64	-0.7
4,316,119	-		ABI39_RS17035	0.76	+1.1
4,316,130	-		ABI39_RS17035	0.78	+0.3
4,316,245	-				-3.2
4,316,305	+				-1.0
4,316,332	+				-0.4
4,316,545	-				+0.1
4,316,547	-				-1.7
4,316,548	+				+0.4
4,316,549	-				+0.7
4,316,590	-				+0.2
4,316,590	-				+0.6
4,316,645	+		ABI39_RS17040	0.16	+0.5
4,316,713	+		ABI39_RS17040	0.28	+1.0
4,316,849	-		ABI39_RS17040	0.51	+0.6
4,316,936	-		ABI39_RS17040	0.67	-1.2
4,316,939	+		ABI39_RS17040	0.67	-0.7
4,316,977	-		ABI39_RS17040	0.74	-1.3
4,317,054	+		ABI39_RS17040	0.87	+0.8
4,317,061	+		ABI39_RS17040	0.89	+0.3
4,317,062	-		ABI39_RS17040	0.89	+0.9
4,317,062	-		ABI39_RS17040	0.89	-0.3
4,317,066	+		ABI39_RS17040	0.89	+0.8
4,317,096	-				+0.5
4,317,155	-				-1.0
4,317,213	-				+0.7
4,317,301	-				+0.7
4,317,329	-				+0.5
4,317,491	-		ABI39_RS17045	0.17	-1.3
4,317,677	+		ABI39_RS17045	0.26	+0.2
4,317,677	+		ABI39_RS17045	0.26	+1.2
4,317,743	+		ABI39_RS17045	0.30	+0.2
4,317,743	+		ABI39_RS17045	0.30	+0.2
4,317,912	+		ABI39_RS17045	0.38	-0.5
4,317,913	-		ABI39_RS17045	0.38	+0.2
4,318,090	-		ABI39_RS17045	0.47	+0.4