Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15635

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
4,042,253	+		ABI39_RS15630	0.21	+1.2
4,042,253	+		ABI39_RS15630	0.21	+2.3
4,042,274	-		ABI39_RS15630	0.23	+0.9
4,042,394	-		ABI39_RS15630	0.33	+0.4
4,042,394	-		ABI39_RS15630	0.33	+2.2
4,042,398	+		ABI39_RS15630	0.33	+2.2
4,042,399	-		ABI39_RS15630	0.34	+1.5
4,042,403	-		ABI39_RS15630	0.34	-2.0
4,042,732	+		ABI39_RS15630	0.61	+1.1
4,042,753	+		ABI39_RS15630	0.63	+1.6
4,042,824	-		ABI39_RS15630	0.69	+2.4
4,042,907	+		ABI39_RS15630	0.76	+2.1
4,042,925	-		ABI39_RS15630	0.77	+1.0
4,042,944	+		ABI39_RS15630	0.79	+0.2
4,042,944	+		ABI39_RS15630	0.79	+0.8
4,042,944	+		ABI39_RS15630	0.79	+2.7
4,043,017	-		ABI39_RS15630	0.85	+0.2
4,043,017	-		ABI39_RS15630	0.85	+1.2
4,043,017	-		ABI39_RS15630	0.85	+0.1
4,043,381	+				+3.3
4,043,438	+		ABI39_RS15635	0.10	+0.5
4,043,440	+		ABI39_RS15635	0.10	+0.9
4,043,440	+		ABI39_RS15635	0.10	+0.3
4,043,440	+		ABI39_RS15635	0.10	+1.9
4,043,452	+		ABI39_RS15635	0.11	+0.8
4,043,469	+		ABI39_RS15635	0.12	+0.9
4,043,513	+		ABI39_RS15635	0.14	-1.3
4,043,571	+		ABI39_RS15635	0.17	+2.5
4,043,577	-		ABI39_RS15635	0.17	-0.7
4,043,578	+		ABI39_RS15635	0.17	-1.5
4,043,617	+		ABI39_RS15635	0.19	+2.4
4,043,683	+		ABI39_RS15635	0.22	+2.3
4,043,684	-		ABI39_RS15635	0.22	+0.3
4,043,828	+		ABI39_RS15635	0.29	+1.8
4,043,928	+		ABI39_RS15635	0.34	+0.7
4,043,935	-		ABI39_RS15635	0.34	+1.7
4,043,992	+		ABI39_RS15635	0.37	-0.1
4,044,121	+		ABI39_RS15635	0.43	+0.7
4,044,123	+		ABI39_RS15635	0.43	+1.5
4,044,124	-		ABI39_RS15635	0.43	-1.0
4,044,217	+		ABI39_RS15635	0.48	+1.2
4,044,234	+		ABI39_RS15635	0.49	+2.2
4,044,248	+		ABI39_RS15635	0.49	+1.2
4,044,304	-		ABI39_RS15635	0.52	+1.7
4,044,347	-		ABI39_RS15635	0.54	+1.8
4,044,361	+		ABI39_RS15635	0.55	-0.1
4,044,362	-		ABI39_RS15635	0.55	+1.7
4,044,362	-		ABI39_RS15635	0.55	+1.0
4,044,363	+		ABI39_RS15635	0.55	+0.8
4,044,364	-		ABI39_RS15635	0.55	+1.1
4,044,369	+		ABI39_RS15635	0.55	+1.6
4,044,430	+		ABI39_RS15635	0.58	+1.3
4,044,432	+		ABI39_RS15635	0.58	+1.1
4,044,529	-		ABI39_RS15635	0.63	+1.1
4,044,592	+		ABI39_RS15635	0.66	+0.1
4,044,625	+		ABI39_RS15635	0.68	+3.1
4,044,755	+		ABI39_RS15635	0.74	-0.8
4,044,756	-		ABI39_RS15635	0.74	+1.7
4,044,822	-		ABI39_RS15635	0.77	+2.3
4,044,832	+		ABI39_RS15635	0.78	+0.6
4,044,984	+		ABI39_RS15635	0.85	+1.6
4,045,092	+				+2.3
4,045,256	+				+1.9
4,045,281	+				+0.5
4,045,395	-				+0.5
4,045,401	-				-0.5
4,045,437	+				+1.3
4,045,520	+				+1.9
4,045,618	+				+2.4
4,045,634	-				+0.2
4,045,637	-				+0.7
4,045,693	-				-0.3
4,045,723	-				-0.1
4,045,723	-				-0.8
4,045,733	-				-0.2
4,045,919	+		ABI39_RS15640	0.12	+1.0
4,045,919	+		ABI39_RS15640	0.12	+1.0
4,045,920	-		ABI39_RS15640	0.12	+1.3
4,046,011	+		ABI39_RS15640	0.16	+1.3
4,046,012	-		ABI39_RS15640	0.16	+0.4
4,046,020	+		ABI39_RS15640	0.16	-0.1
4,046,052	-		ABI39_RS15640	0.18	-1.0
4,046,055	+		ABI39_RS15640	0.18	+0.9
4,046,056	-		ABI39_RS15640	0.18	-0.9
4,046,100	-		ABI39_RS15640	0.20	+0.4
4,046,134	-		ABI39_RS15640	0.22	+1.1
4,046,172	+		ABI39_RS15640	0.23	-0.2
4,046,172	+		ABI39_RS15640	0.23	+0.2
4,046,173	-		ABI39_RS15640	0.24	-0.4
4,046,199	+		ABI39_RS15640	0.25	-0.5
4,046,216	+		ABI39_RS15640	0.25	-0.4