Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06990

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS06985 and ABI39_RS06990 are separated by 4 nucleotidesABI39_RS06990 and ABI39_RS06995 are separated by 152 nucleotides ABI39_RS06985: ABI39_RS06985 - YifB family Mg chelatase-like AAA ATPase, at 1,933,205 to 1,934,743 _RS06985 ABI39_RS06990: ABI39_RS06990 - DUF4369 domain-containing protein, at 1,934,748 to 1,935,815 _RS06990 ABI39_RS06995: ABI39_RS06995 - tetratricopeptide repeat protein, at 1,935,968 to 1,937,644 _RS06995 Position (kb) 1934 1935 1936Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1933.760 kb on + strand, within ABI39_RS06985at 1933.760 kb on + strand, within ABI39_RS06985at 1933.762 kb on + strand, within ABI39_RS06985at 1933.763 kb on - strand, within ABI39_RS06985at 1933.763 kb on - strand, within ABI39_RS06985at 1933.763 kb on - strand, within ABI39_RS06985at 1933.765 kb on - strand, within ABI39_RS06985at 1933.800 kb on - strand, within ABI39_RS06985at 1934.045 kb on - strand, within ABI39_RS06985at 1934.336 kb on + strand, within ABI39_RS06985at 1934.376 kb on - strand, within ABI39_RS06985at 1934.434 kb on + strand, within ABI39_RS06985at 1934.434 kb on + strand, within ABI39_RS06985at 1934.524 kb on + strand, within ABI39_RS06985at 1934.586 kb on - strand, within ABI39_RS06985at 1934.893 kb on - strand, within ABI39_RS06990at 1934.895 kb on - strand, within ABI39_RS06990at 1934.895 kb on - strand, within ABI39_RS06990at 1934.898 kb on + strand, within ABI39_RS06990at 1934.898 kb on + strand, within ABI39_RS06990at 1934.899 kb on - strand, within ABI39_RS06990at 1935.091 kb on - strand, within ABI39_RS06990at 1935.276 kb on - strand, within ABI39_RS06990at 1935.324 kb on + strand, within ABI39_RS06990at 1935.325 kb on - strand, within ABI39_RS06990at 1935.361 kb on + strand, within ABI39_RS06990at 1935.386 kb on + strand, within ABI39_RS06990at 1935.386 kb on + strand, within ABI39_RS06990at 1935.407 kb on + strand, within ABI39_RS06990at 1935.453 kb on + strand, within ABI39_RS06990at 1935.595 kb on - strand, within ABI39_RS06990at 1935.669 kb on + strand, within ABI39_RS06990at 1935.699 kb on + strand, within ABI39_RS06990at 1935.702 kb on + strand, within ABI39_RS06990at 1935.704 kb on + strand, within ABI39_RS06990at 1935.704 kb on + strand, within ABI39_RS06990at 1935.705 kb on - strand, within ABI39_RS06990at 1935.705 kb on - strand, within ABI39_RS06990at 1935.750 kb on - strandat 1935.922 kb on - strandat 1935.957 kb on - strandat 1935.960 kb on + strandat 1935.964 kb on + strandat 1936.170 kb on + strand, within ABI39_RS06995at 1936.246 kb on - strand, within ABI39_RS06995at 1936.294 kb on + strand, within ABI39_RS06995at 1936.317 kb on + strand, within ABI39_RS06995at 1936.420 kb on - strand, within ABI39_RS06995at 1936.474 kb on + strand, within ABI39_RS06995at 1936.563 kb on + strand, within ABI39_RS06995at 1936.674 kb on - strand, within ABI39_RS06995at 1936.709 kb on + strand, within ABI39_RS06995

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Per-strain Table

Position Strand Gene LocusTag Fraction Starch soluble; autoclaved 2.5 mg/ml (C)
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1,933,760 + ABI39_RS06985 0.36 +0.6
1,933,760 + ABI39_RS06985 0.36 +0.2
1,933,762 + ABI39_RS06985 0.36 +0.1
1,933,763 - ABI39_RS06985 0.36 -0.0
1,933,763 - ABI39_RS06985 0.36 -0.3
1,933,763 - ABI39_RS06985 0.36 -0.8
1,933,765 - ABI39_RS06985 0.36 +0.1
1,933,800 - ABI39_RS06985 0.39 +0.8
1,934,045 - ABI39_RS06985 0.55 -0.1
1,934,336 + ABI39_RS06985 0.73 -1.2
1,934,376 - ABI39_RS06985 0.76 +0.7
1,934,434 + ABI39_RS06985 0.80 -0.7
1,934,434 + ABI39_RS06985 0.80 +0.9
1,934,524 + ABI39_RS06985 0.86 -0.7
1,934,586 - ABI39_RS06985 0.90 +0.1
1,934,893 - ABI39_RS06990 0.14 -0.5
1,934,895 - ABI39_RS06990 0.14 -0.7
1,934,895 - ABI39_RS06990 0.14 -2.2
1,934,898 + ABI39_RS06990 0.14 -0.4
1,934,898 + ABI39_RS06990 0.14 -2.5
1,934,899 - ABI39_RS06990 0.14 -1.9
1,935,091 - ABI39_RS06990 0.32 -2.5
1,935,276 - ABI39_RS06990 0.49 -1.3
1,935,324 + ABI39_RS06990 0.54 -1.3
1,935,325 - ABI39_RS06990 0.54 -1.4
1,935,361 + ABI39_RS06990 0.57 -0.7
1,935,386 + ABI39_RS06990 0.60 -2.3
1,935,386 + ABI39_RS06990 0.60 -0.7
1,935,407 + ABI39_RS06990 0.62 -2.3
1,935,453 + ABI39_RS06990 0.66 -1.7
1,935,595 - ABI39_RS06990 0.79 -1.3
1,935,669 + ABI39_RS06990 0.86 -1.3
1,935,699 + ABI39_RS06990 0.89 -3.1
1,935,702 + ABI39_RS06990 0.89 -2.0
1,935,704 + ABI39_RS06990 0.90 -2.4
1,935,704 + ABI39_RS06990 0.90 -1.3
1,935,705 - ABI39_RS06990 0.90 +0.1
1,935,705 - ABI39_RS06990 0.90 -1.2
1,935,750 - -4.4
1,935,922 - -1.2
1,935,957 - -0.8
1,935,960 + -0.6
1,935,964 + -0.0
1,936,170 + ABI39_RS06995 0.12 -3.2
1,936,246 - ABI39_RS06995 0.17 -0.1
1,936,294 + ABI39_RS06995 0.19 -2.5
1,936,317 + ABI39_RS06995 0.21 -2.6
1,936,420 - ABI39_RS06995 0.27 -2.4
1,936,474 + ABI39_RS06995 0.30 -2.3
1,936,563 + ABI39_RS06995 0.35 -4.3
1,936,674 - ABI39_RS06995 0.42 -3.1
1,936,709 + ABI39_RS06995 0.44 -1.4

Or see this region's nucleotide sequence