Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05660

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
1,556,832	+		ABI39_RS05650	0.82	-1.3
1,556,895	+		ABI39_RS05650	0.87	-1.3
1,556,906	-		ABI39_RS05650	0.87	-0.8
1,557,079	-				-1.0
1,557,102	+				-1.3
1,557,162	+				+0.1
1,557,237	-				+1.2
1,557,237	-				+1.2
1,557,242	+				-0.3
1,557,290	-				-1.2
1,557,357	+				-0.6
1,557,358	-				-2.3
1,557,375	-				-3.4
1,557,442	+				-1.6
1,557,469	-		ABI39_RS05655	0.15	-2.2
1,557,532	+		ABI39_RS05655	0.33	-0.6
1,557,673	+		ABI39_RS05655	0.73	-0.5
1,557,694	+		ABI39_RS05655	0.79	-1.1
1,557,696	+		ABI39_RS05655	0.80	+0.5
1,557,954	+				-4.7
1,557,969	+		ABI39_RS05660	0.11	-2.7
1,558,097	+		ABI39_RS05660	0.20	-1.6
1,558,098	-		ABI39_RS05660	0.20	-4.6
1,558,103	-		ABI39_RS05660	0.20	-4.2
1,558,103	-		ABI39_RS05660	0.20	-5.5
1,558,140	-		ABI39_RS05660	0.22	-5.8
1,558,163	+		ABI39_RS05660	0.24	-4.7
1,558,212	-		ABI39_RS05660	0.27	-4.8
1,558,648	+		ABI39_RS05660	0.56	-3.9
1,558,713	+		ABI39_RS05660	0.61	-4.1
1,558,714	-		ABI39_RS05660	0.61	-4.6
1,558,756	+		ABI39_RS05660	0.64	-5.6
1,558,857	+		ABI39_RS05660	0.70	-3.1
1,558,978	-		ABI39_RS05660	0.79	-4.9
1,559,064	+		ABI39_RS05660	0.84	-2.4
1,559,179	+				-2.8
1,559,183	+				-3.9
1,559,217	+				-3.0
1,559,297	-				+1.0
1,559,336	+				-1.0
1,559,336	+				+0.3
1,559,336	+				-0.6
1,559,340	+				-0.3
1,559,359	+				+1.5
1,559,360	-				-0.7
1,559,364	-				+0.4
1,559,427	+				-0.0
1,559,457	+				-0.7
1,559,457	+				-1.1
1,559,458	-				-1.0
1,559,500	-				+0.6
1,559,506	-				-1.4
1,559,568	+				+0.4
1,559,680	+				-0.2
1,559,782	-		ABI39_RS05665	0.12	+0.7
1,559,782	-		ABI39_RS05665	0.12	+1.3
1,559,786	-		ABI39_RS05665	0.12	+0.2
1,559,793	-		ABI39_RS05665	0.12	-0.0
1,560,028	-		ABI39_RS05665	0.21	-1.2
1,560,129	-		ABI39_RS05665	0.25	-0.6
1,560,169	-		ABI39_RS05665	0.26	-1.2
1,560,177	+		ABI39_RS05665	0.27	+0.6
1,560,277	-		ABI39_RS05665	0.31	-0.6