Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05405

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
1,501,622	+		ABI39_RS05400	0.52	+0.9
1,501,651	+		ABI39_RS05400	0.53	-0.1
1,501,757	+		ABI39_RS05400	0.60	-0.8
1,501,758	-		ABI39_RS05400	0.60	-0.1
1,501,831	+		ABI39_RS05400	0.64	+0.6
1,501,946	-		ABI39_RS05400	0.71	+0.1
1,502,043	-		ABI39_RS05400	0.76	-0.2
1,502,187	-		ABI39_RS05400	0.85	-1.4
1,502,458	-				+0.5
1,502,530	-				-0.4
1,502,574	+				-2.9
1,502,604	-				-1.0
1,502,616	+				-1.7
1,502,616	+				+0.0
1,502,619	+				-0.7
1,502,725	+				-0.4
1,502,789	+		ABI39_RS05405	0.11	-2.1
1,502,790	-		ABI39_RS05405	0.11	-1.2
1,502,953	+		ABI39_RS05405	0.19	-1.7
1,502,967	+		ABI39_RS05405	0.20	-1.2
1,502,968	-		ABI39_RS05405	0.20	+0.1
1,503,213	+		ABI39_RS05405	0.33	-0.5
1,503,213	+		ABI39_RS05405	0.33	-2.6
1,503,565	-		ABI39_RS05405	0.52	-2.0
1,503,586	-		ABI39_RS05405	0.53	-1.2
1,503,586	-		ABI39_RS05405	0.53	-1.6
1,503,590	+		ABI39_RS05405	0.53	-2.1
1,503,620	+		ABI39_RS05405	0.55	-1.1
1,503,621	-		ABI39_RS05405	0.55	-1.6
1,503,917	-		ABI39_RS05405	0.71	-1.7
1,503,938	+		ABI39_RS05405	0.72	-1.9
1,504,105	-		ABI39_RS05405	0.81	-1.6
1,504,132	+		ABI39_RS05405	0.82	-1.4
1,504,248	-		ABI39_RS05405	0.89	-1.2
1,504,490	+				-0.1
1,504,539	+				+0.1
1,504,649	+		ABI39_RS05410	0.24	-0.9
1,504,660	+		ABI39_RS05410	0.26	-0.2
1,504,675	-		ABI39_RS05410	0.29	-0.2
1,504,686	-		ABI39_RS05410	0.31	-0.3
1,504,695	-		ABI39_RS05410	0.33	+0.4
1,504,695	-		ABI39_RS05410	0.33	-0.3
1,504,794	-		ABI39_RS05410	0.52	+0.2
1,504,838	+		ABI39_RS05410	0.60	+0.2
1,504,839	-		ABI39_RS05410	0.60	+2.0
1,504,868	+		ABI39_RS05410	0.66	-1.0
1,504,869	-		ABI39_RS05410	0.66	+0.5
1,504,889	+		ABI39_RS05410	0.70	-1.0
1,504,889	+		ABI39_RS05410	0.70	-0.8
1,504,931	+		ABI39_RS05410	0.78	+0.4
1,505,037	+				-0.3
1,505,038	-				-0.5
1,505,042	+				+1.6
1,505,096	-				+0.3
1,505,096	-				-1.2
1,505,096	-				+0.8
1,505,150	+				-0.8
1,505,151	+				-0.6
1,505,152	+				+0.8
1,505,175	+				+2.0
1,505,176	-				+0.1
1,505,176	-				-0.4
1,505,178	-				+0.8
1,505,362	+				-0.2
1,505,373	-				-0.1
1,505,380	+				+0.2
1,505,386	-				-0.3
1,505,393	+				+1.1
1,505,447	-				-1.4