Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04455

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
1,252,041	+		ABI39_RS04450	0.81	-0.7
1,252,054	-		ABI39_RS04450	0.82	-1.8
1,252,057	+		ABI39_RS04450	0.83	-0.3
1,252,073	-		ABI39_RS04450	0.84	-2.5
1,252,113	+		ABI39_RS04450	0.88	-0.2
1,252,114	-		ABI39_RS04450	0.88	-0.4
1,252,188	-				-0.4
1,252,202	+				+0.2
1,252,203	-				-1.5
1,252,215	+				-0.4
1,252,248	-				+1.6
1,252,254	-				-2.1
1,252,265	+				+1.3
1,252,274	-				-1.1
1,252,550	+				+5.4
1,252,626	+				-0.3
1,252,678	-				-2.5
1,252,800	-				-2.8
1,253,085	+				-4.7
1,253,104	+				-5.5
1,253,125	+				-4.7
1,253,157	+				-5.6
1,253,207	-				-5.0
1,253,401	+		ABI39_RS04455	0.15	-4.0
1,253,401	+		ABI39_RS04455	0.15	-4.5
1,253,440	-		ABI39_RS04455	0.16	-3.7
1,253,478	+		ABI39_RS04455	0.17	-1.4
1,253,479	-		ABI39_RS04455	0.17	-5.8
1,253,580	+		ABI39_RS04455	0.21	-3.2
1,253,647	+		ABI39_RS04455	0.23	-4.1
1,253,693	-		ABI39_RS04455	0.24	-5.5
1,253,759	-		ABI39_RS04455	0.27	-6.2
1,253,770	-		ABI39_RS04455	0.27	-5.5
1,253,833	+		ABI39_RS04455	0.29	-5.2
1,253,837	+		ABI39_RS04455	0.29	-5.6
1,253,868	+		ABI39_RS04455	0.30	-3.1
1,253,907	+		ABI39_RS04455	0.31	-1.6
1,254,112	+		ABI39_RS04455	0.38	-4.4
1,254,286	+		ABI39_RS04455	0.44	-5.9
1,254,346	-		ABI39_RS04455	0.46	-0.9
1,254,375	+		ABI39_RS04455	0.47	-5.8
1,254,447	-		ABI39_RS04455	0.49	-4.6
1,254,724	-		ABI39_RS04455	0.58	-4.6
1,254,724	-		ABI39_RS04455	0.58	-6.1
1,254,752	-		ABI39_RS04455	0.59	-4.9
1,255,054	+		ABI39_RS04455	0.69	-5.6
1,255,054	+		ABI39_RS04455	0.69	-5.0
1,255,148	+		ABI39_RS04455	0.72	-3.8
1,255,279	+		ABI39_RS04455	0.76	-2.1
1,255,291	+		ABI39_RS04455	0.76	-3.0
1,255,291	+		ABI39_RS04455	0.76	-2.0
1,255,291	+		ABI39_RS04455	0.76	-5.3
1,255,291	+		ABI39_RS04455	0.76	-4.4
1,255,292	-		ABI39_RS04455	0.76	-3.7
1,255,296	-		ABI39_RS04455	0.76	-4.4
1,255,320	+		ABI39_RS04455	0.77	-4.4
1,255,400	+		ABI39_RS04455	0.80	-6.6
1,255,433	+		ABI39_RS04455	0.81	-2.5
1,255,449	+		ABI39_RS04455	0.81	-3.6
1,255,489	-		ABI39_RS04455	0.83	-5.8
1,255,561	+		ABI39_RS04455	0.85	-4.5
1,255,626	+		ABI39_RS04455	0.87	-5.0
1,255,634	+		ABI39_RS04455	0.87	-6.0
1,255,635	-		ABI39_RS04455	0.87	-4.1
1,255,640	+		ABI39_RS04455	0.88	-5.1
1,255,641	-		ABI39_RS04455	0.88	-5.7
1,255,641	-		ABI39_RS04455	0.88	-5.5
1,255,686	+		ABI39_RS04455	0.89	-4.2
1,255,686	+		ABI39_RS04455	0.89	-5.5
1,255,887	+				-3.2
1,255,925	+				-4.4
1,255,925	+				-3.6
1,256,120	+				-4.8
1,256,120	+				-5.5
1,256,121	-				-4.1
1,256,126	+				-5.7
1,256,259	+		ABI39_RS04460	0.14	-5.8
1,256,260	-		ABI39_RS04460	0.14	-4.3
1,256,362	-		ABI39_RS04460	0.20	-6.1
1,256,362	-		ABI39_RS04460	0.20	-3.6
1,256,366	-		ABI39_RS04460	0.21	-4.1
1,256,382	+		ABI39_RS04460	0.22	-5.0
1,256,398	+		ABI39_RS04460	0.23	-5.1
1,256,398	+		ABI39_RS04460	0.23	-5.0
1,256,430	+		ABI39_RS04460	0.25	-4.4
1,256,502	-		ABI39_RS04460	0.29	-3.3
1,256,594	-		ABI39_RS04460	0.35	-5.0
1,256,777	-		ABI39_RS04460	0.46	-4.6
1,256,815	-		ABI39_RS04460	0.48	-3.9
1,256,842	+		ABI39_RS04460	0.50	-6.3