Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04425

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
1,239,604	-				-0.2
1,239,617	+				-0.2
1,239,689	+				+0.9
1,239,718	-				+0.6
1,239,835	-		ABI39_RS21685	0.51	-0.0
1,239,895	-		ABI39_RS21685	0.76	-0.1
1,239,973	+				-1.3
1,240,047	-				-0.2
1,240,086	+				+2.5
1,240,295	+		ABI39_RS04420	0.75	-0.5
1,240,332	+		ABI39_RS04420	0.88	-0.3
1,240,432	-				-0.8
1,240,437	+				-0.2
1,240,437	+				-3.5
1,240,438	-				-1.4
1,240,442	+				-1.6
1,240,463	-				+0.2
1,240,463	-				-1.1
1,240,468	+				-0.9
1,240,480	+				-1.9
1,240,481	-				+0.1
1,240,633	-				-4.3
1,240,633	-				-0.8
1,240,673	-		ABI39_RS04425	0.12	-4.5
1,240,675	-		ABI39_RS04425	0.12	-5.8
1,240,696	-		ABI39_RS04425	0.14	-6.3
1,240,745	+		ABI39_RS04425	0.17	-5.0
1,240,746	-		ABI39_RS04425	0.17	-4.5
1,240,757	+		ABI39_RS04425	0.17	-4.6
1,240,760	-		ABI39_RS04425	0.18	-3.6
1,240,915	+		ABI39_RS04425	0.27	-5.3
1,240,915	+		ABI39_RS04425	0.27	-6.1
1,241,123	+		ABI39_RS04425	0.40	-6.2
1,241,224	+		ABI39_RS04425	0.47	-5.4
1,241,389	+		ABI39_RS04425	0.57	-5.5
1,241,393	+		ABI39_RS04425	0.57	-3.9
1,241,493	+		ABI39_RS04425	0.64	-2.8
1,241,535	-		ABI39_RS04425	0.66	-5.0
1,241,594	+		ABI39_RS04425	0.70	-6.0
1,241,595	-		ABI39_RS04425	0.70	-4.5
1,241,641	+		ABI39_RS04425	0.73	-5.9
1,241,707	+		ABI39_RS04425	0.77	-4.3
1,241,812	+		ABI39_RS04425	0.84	-5.1
1,241,813	-		ABI39_RS04425	0.84	-5.0
1,241,813	-		ABI39_RS04425	0.84	-6.1
1,241,842	+		ABI39_RS04425	0.85	-4.2
1,241,842	+		ABI39_RS04425	0.85	-5.1
1,241,885	+		ABI39_RS04425	0.88	-5.4
1,241,958	-				-3.6
1,242,079	+				-4.9
1,242,081	+				-4.7
1,242,090	+				-4.5
1,242,270	-				-4.3
1,242,299	+				-3.9
1,242,318	-				-2.5
1,242,322	+				-4.7
1,242,394	-				-4.1
1,242,398	-				-6.3
1,242,490	-				-4.5
1,242,558	+		ABI39_RS04430	0.13	-3.4
1,242,598	+		ABI39_RS04430	0.15	-3.1
1,242,602	-		ABI39_RS04430	0.15	-5.4
1,242,602	-		ABI39_RS04430	0.15	-1.4
1,242,700	-		ABI39_RS04430	0.20	-5.5
1,242,702	+		ABI39_RS04430	0.20	-2.3
1,242,702	+		ABI39_RS04430	0.20	-2.7
1,242,703	-		ABI39_RS04430	0.21	-3.4
1,242,836	-		ABI39_RS04430	0.28	-5.8
1,242,917	+		ABI39_RS04430	0.32	-3.5
1,242,927	-		ABI39_RS04430	0.33	-4.4
1,243,065	-		ABI39_RS04430	0.40	-4.0