Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00575

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00570 and ABI39_RS00575 are separated by 150 nucleotidesABI39_RS00575 and ABI39_RS00580 are separated by 6 nucleotides ABI39_RS00570: ABI39_RS00570 - glycoside hydrolase family 97 protein, at 158,648 to 160,585 _RS00570 ABI39_RS00575: ABI39_RS00575 - hypothetical protein, at 160,736 to 163,372 _RS00575 ABI39_RS00580: ABI39_RS00580 - serine hydrolase, at 163,379 to 164,467 _RS00580 Position (kb) 160 161 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 159.809 kb on - strand, within ABI39_RS00570at 159.840 kb on + strand, within ABI39_RS00570at 159.841 kb on - strand, within ABI39_RS00570at 159.908 kb on + strand, within ABI39_RS00570at 160.087 kb on + strand, within ABI39_RS00570at 160.155 kb on - strand, within ABI39_RS00570at 160.200 kb on + strand, within ABI39_RS00570at 160.201 kb on - strand, within ABI39_RS00570at 160.207 kb on + strand, within ABI39_RS00570at 160.207 kb on + strand, within ABI39_RS00570at 160.207 kb on + strand, within ABI39_RS00570at 160.208 kb on - strand, within ABI39_RS00570at 160.284 kb on + strand, within ABI39_RS00570at 160.288 kb on + strand, within ABI39_RS00570at 160.288 kb on + strand, within ABI39_RS00570at 160.419 kb on + strandat 160.565 kb on + strandat 160.607 kb on + strandat 160.752 kb on + strandat 160.753 kb on - strandat 160.853 kb on + strandat 160.853 kb on + strandat 160.915 kb on - strandat 161.002 kb on + strand, within ABI39_RS00575at 161.110 kb on + strand, within ABI39_RS00575at 161.162 kb on - strand, within ABI39_RS00575at 161.301 kb on - strand, within ABI39_RS00575at 161.327 kb on - strand, within ABI39_RS00575at 161.355 kb on + strand, within ABI39_RS00575at 161.356 kb on - strand, within ABI39_RS00575at 161.459 kb on - strand, within ABI39_RS00575at 161.473 kb on + strand, within ABI39_RS00575at 161.477 kb on + strand, within ABI39_RS00575at 161.533 kb on - strand, within ABI39_RS00575at 161.613 kb on + strand, within ABI39_RS00575at 161.613 kb on + strand, within ABI39_RS00575at 161.655 kb on - strand, within ABI39_RS00575at 161.696 kb on - strand, within ABI39_RS00575at 161.809 kb on - strand, within ABI39_RS00575at 161.809 kb on - strand, within ABI39_RS00575at 161.845 kb on - strand, within ABI39_RS00575at 161.863 kb on - strand, within ABI39_RS00575at 161.932 kb on - strand, within ABI39_RS00575at 162.097 kb on - strand, within ABI39_RS00575at 162.236 kb on - strand, within ABI39_RS00575at 162.236 kb on - strand, within ABI39_RS00575at 162.236 kb on - strand, within ABI39_RS00575at 162.238 kb on + strand, within ABI39_RS00575at 162.238 kb on + strand, within ABI39_RS00575at 162.243 kb on - strand, within ABI39_RS00575at 162.303 kb on + strand, within ABI39_RS00575at 162.436 kb on - strand, within ABI39_RS00575at 162.479 kb on - strand, within ABI39_RS00575at 162.551 kb on + strand, within ABI39_RS00575at 162.691 kb on - strand, within ABI39_RS00575at 162.798 kb on - strand, within ABI39_RS00575at 162.799 kb on + strand, within ABI39_RS00575at 162.886 kb on + strand, within ABI39_RS00575at 162.987 kb on + strand, within ABI39_RS00575at 163.020 kb on + strand, within ABI39_RS00575at 163.025 kb on - strand, within ABI39_RS00575at 163.052 kb on + strand, within ABI39_RS00575at 163.073 kb on - strand, within ABI39_RS00575at 163.293 kb on + strandat 163.330 kb on + strandat 163.331 kb on - strandat 163.469 kb on + strandat 163.470 kb on - strandat 163.606 kb on - strand, within ABI39_RS00580at 163.690 kb on + strand, within ABI39_RS00580at 163.771 kb on - strand, within ABI39_RS00580at 163.807 kb on + strand, within ABI39_RS00580at 163.808 kb on - strand, within ABI39_RS00580at 163.917 kb on - strand, within ABI39_RS00580at 164.034 kb on + strand, within ABI39_RS00580at 164.034 kb on + strand, within ABI39_RS00580at 164.035 kb on - strand, within ABI39_RS00580at 164.035 kb on - strand, within ABI39_RS00580at 164.070 kb on - strand, within ABI39_RS00580at 164.308 kb on - strand, within ABI39_RS00580at 164.368 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Starch soluble; autoclaved 2.5 mg/ml (C)
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159,809 - ABI39_RS00570 0.60 +0.5
159,840 + ABI39_RS00570 0.62 -0.8
159,841 - ABI39_RS00570 0.62 +1.1
159,908 + ABI39_RS00570 0.65 -0.6
160,087 + ABI39_RS00570 0.74 +0.6
160,155 - ABI39_RS00570 0.78 +0.1
160,200 + ABI39_RS00570 0.80 +0.6
160,201 - ABI39_RS00570 0.80 -1.1
160,207 + ABI39_RS00570 0.80 +0.3
160,207 + ABI39_RS00570 0.80 -0.2
160,207 + ABI39_RS00570 0.80 +0.8
160,208 - ABI39_RS00570 0.80 +0.9
160,284 + ABI39_RS00570 0.84 -1.1
160,288 + ABI39_RS00570 0.85 +0.4
160,288 + ABI39_RS00570 0.85 -0.1
160,419 + +0.0
160,565 + +1.6
160,607 + +0.6
160,752 + +0.2
160,753 - -0.5
160,853 + +0.5
160,853 + -0.2
160,915 - +1.2
161,002 + ABI39_RS00575 0.10 +0.9
161,110 + ABI39_RS00575 0.14 +0.0
161,162 - ABI39_RS00575 0.16 +0.1
161,301 - ABI39_RS00575 0.21 -0.7
161,327 - ABI39_RS00575 0.22 +0.8
161,355 + ABI39_RS00575 0.23 -0.3
161,356 - ABI39_RS00575 0.24 -0.3
161,459 - ABI39_RS00575 0.27 -1.2
161,473 + ABI39_RS00575 0.28 -0.1
161,477 + ABI39_RS00575 0.28 -0.7
161,533 - ABI39_RS00575 0.30 +1.0
161,613 + ABI39_RS00575 0.33 +1.4
161,613 + ABI39_RS00575 0.33 -0.6
161,655 - ABI39_RS00575 0.35 +1.1
161,696 - ABI39_RS00575 0.36 +0.7
161,809 - ABI39_RS00575 0.41 +0.4
161,809 - ABI39_RS00575 0.41 +0.5
161,845 - ABI39_RS00575 0.42 +1.3
161,863 - ABI39_RS00575 0.43 -0.4
161,932 - ABI39_RS00575 0.45 -2.3
162,097 - ABI39_RS00575 0.52 -0.9
162,236 - ABI39_RS00575 0.57 +0.5
162,236 - ABI39_RS00575 0.57 +2.3
162,236 - ABI39_RS00575 0.57 +0.2
162,238 + ABI39_RS00575 0.57 -0.2
162,238 + ABI39_RS00575 0.57 +0.8
162,243 - ABI39_RS00575 0.57 +0.5
162,303 + ABI39_RS00575 0.59 -0.4
162,436 - ABI39_RS00575 0.64 +0.3
162,479 - ABI39_RS00575 0.66 -1.2
162,551 + ABI39_RS00575 0.69 +0.4
162,691 - ABI39_RS00575 0.74 +1.3
162,798 - ABI39_RS00575 0.78 +0.7
162,799 + ABI39_RS00575 0.78 +0.3
162,886 + ABI39_RS00575 0.82 +1.0
162,987 + ABI39_RS00575 0.85 -0.2
163,020 + ABI39_RS00575 0.87 +0.3
163,025 - ABI39_RS00575 0.87 +0.7
163,052 + ABI39_RS00575 0.88 -0.6
163,073 - ABI39_RS00575 0.89 +0.3
163,293 + +0.2
163,330 + +0.6
163,331 - -0.3
163,469 + +1.5
163,470 - -0.8
163,606 - ABI39_RS00580 0.21 -0.2
163,690 + ABI39_RS00580 0.29 +0.1
163,771 - ABI39_RS00580 0.36 +1.3
163,807 + ABI39_RS00580 0.39 -0.2
163,808 - ABI39_RS00580 0.39 -0.4
163,917 - ABI39_RS00580 0.49 +2.1
164,034 + ABI39_RS00580 0.60 -0.6
164,034 + ABI39_RS00580 0.60 -0.6
164,035 - ABI39_RS00580 0.60 +1.4
164,035 - ABI39_RS00580 0.60 -0.6
164,070 - ABI39_RS00580 0.63 +1.2
164,308 - ABI39_RS00580 0.85 +0.4
164,368 + +0.9

Or see this region's nucleotide sequence