Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS21040

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
5,180,432	+		ABI39_RS21035	0.19	+0.2
5,180,432	+		ABI39_RS21035	0.19	+0.4
5,180,432	+		ABI39_RS21035	0.19	-1.0
5,180,433	-		ABI39_RS21035	0.19	+0.8
5,180,563	+		ABI39_RS21035	0.42	+0.6
5,180,639	-		ABI39_RS21035	0.55	-1.0
5,180,791	+		ABI39_RS21035	0.82	-0.1
5,180,861	-				-0.1
5,180,873	-				-0.2
5,180,927	+				-0.6
5,180,968	+				-1.0
5,180,968	+				+0.2
5,181,029	-				+0.4
5,181,148	-				+0.3
5,181,250	-				+1.0
5,181,267	-				-1.3
5,181,275	+				+1.6
5,181,363	-				-0.6
5,181,363	-				+1.3
5,181,403	+		ABI39_RS21040	0.13	+0.9
5,181,427	+		ABI39_RS21040	0.22	+0.7
5,181,478	-		ABI39_RS21040	0.42	-0.0
5,181,496	+		ABI39_RS21040	0.49	+0.4
5,181,536	+		ABI39_RS21040	0.64	-0.0
5,181,537	-		ABI39_RS21040	0.64	-0.9
5,181,551	-		ABI39_RS21040	0.70	+0.9
5,181,608	-				+0.9
5,181,624	-				-0.4
5,181,717	+				-3.3
5,181,718	-				-3.8
5,181,718	-				-4.2
5,181,721	+				-4.2
5,181,725	+				-3.5
5,181,776	+				-4.0
5,181,783	-				-4.0
5,181,797	+				-0.6
5,181,877	+				-3.2
5,181,917	+				-3.4
5,182,292	+		ABI39_RS21045	0.34	-3.0
5,182,449	-		ABI39_RS21045	0.47	-4.9
5,182,449	-		ABI39_RS21045	0.47	-3.9
5,182,451	+		ABI39_RS21045	0.47	-1.6
5,182,566	-		ABI39_RS21045	0.57	-1.7
5,182,574	+		ABI39_RS21045	0.57	-3.5
5,182,628	+		ABI39_RS21045	0.62	-2.2
5,182,628	+		ABI39_RS21045	0.62	-4.5
5,182,629	-		ABI39_RS21045	0.62	-2.9