Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20500

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
5,057,015	+		ABI39_RS20495	0.33	-0.1
5,057,015	+		ABI39_RS20495	0.33	-0.3
5,057,142	+		ABI39_RS20495	0.44	-0.6
5,057,142	+		ABI39_RS20495	0.44	+0.7
5,057,288	-		ABI39_RS20495	0.57	+0.6
5,057,353	-		ABI39_RS20495	0.62	-0.6
5,057,353	-		ABI39_RS20495	0.62	+0.2
5,057,461	+		ABI39_RS20495	0.72	-0.5
5,057,665	+		ABI39_RS20495	0.89	-0.9
5,057,666	-		ABI39_RS20495	0.89	-1.2
5,057,672	+		ABI39_RS20495	0.90	-0.1
5,057,674	+				+1.1
5,057,675	-				-0.4
5,057,679	-				-0.2
5,057,723	-				-0.5
5,057,792	+				+0.4
5,057,799	-				-0.1
5,057,801	-				+0.2
5,057,801	-				+1.1
5,057,812	+				+0.6
5,058,149	-		ABI39_RS20500	0.58	-0.8
5,058,195	-		ABI39_RS20500	0.66	+1.7
5,058,227	+		ABI39_RS20500	0.71	+0.9
5,058,414	+				+1.4
5,058,507	+		ABI39_RS20505	0.14	+0.2
5,058,510	+		ABI39_RS20505	0.15	+0.0
5,058,530	-		ABI39_RS20505	0.17	+1.0
5,058,687	+		ABI39_RS20505	0.36	+0.3
5,058,687	+		ABI39_RS20505	0.36	+0.6
5,058,926	-		ABI39_RS20505	0.65	+0.7
5,058,926	-		ABI39_RS20505	0.65	+0.8
5,059,098	+		ABI39_RS20505	0.86	-4.4
5,059,104	-		ABI39_RS20505	0.87	+0.6
5,059,104	-		ABI39_RS20505	0.87	+0.6
5,059,161	-				+0.7
5,059,189	+				+0.0
5,059,193	+				-0.2
5,059,211	+				-2.0
5,059,244	-				-0.8
5,059,248	-				+0.2
5,059,290	+				+0.9