Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20275

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
5,004,463	-		ABI39_RS20270	0.24	-0.0
5,004,580	-		ABI39_RS20270	0.33	-2.2
5,004,704	-		ABI39_RS20270	0.43	-0.2
5,004,704	-		ABI39_RS20270	0.43	-0.1
5,004,725	+		ABI39_RS20270	0.45	-0.2
5,004,725	+		ABI39_RS20270	0.45	-1.6
5,004,781	-		ABI39_RS20270	0.49	-0.9
5,004,859	-		ABI39_RS20270	0.55	+0.5
5,004,865	-		ABI39_RS20270	0.56	+2.1
5,004,961	-		ABI39_RS20270	0.63	-0.4
5,004,963	-		ABI39_RS20270	0.64	+0.9
5,004,976	+		ABI39_RS20270	0.65	+1.3
5,004,981	+		ABI39_RS20270	0.65	-0.0
5,004,981	+		ABI39_RS20270	0.65	+0.9
5,004,982	-		ABI39_RS20270	0.65	-1.2
5,004,982	-		ABI39_RS20270	0.65	-1.0
5,004,991	-		ABI39_RS20270	0.66	+1.0
5,005,052	-		ABI39_RS20270	0.71	-0.4
5,005,055	-		ABI39_RS20270	0.71	-0.5
5,005,167	+		ABI39_RS20270	0.80	+0.1
5,005,299	+				+1.4
5,005,344	+				-0.2
5,005,344	+				+0.7
5,005,345	-				-1.3
5,005,417	-				+1.5
5,005,419	+				-1.1
5,005,420	-				-0.5
5,005,431	-				-0.6
5,005,498	+				+0.0
5,005,553	-		ABI39_RS20275	0.11	-1.0
5,005,584	+		ABI39_RS20275	0.15	-1.6
5,005,645	+		ABI39_RS20275	0.21	-0.8
5,005,645	+		ABI39_RS20275	0.21	+1.9
5,005,645	+		ABI39_RS20275	0.21	-2.2
5,005,646	-		ABI39_RS20275	0.21	-0.6
5,005,700	-		ABI39_RS20275	0.27	-1.1
5,005,755	+		ABI39_RS20275	0.33	-0.1
5,005,755	+		ABI39_RS20275	0.33	-1.2
5,005,757	+		ABI39_RS20275	0.33	-0.8
5,005,763	+		ABI39_RS20275	0.34	-0.6
5,005,792	-		ABI39_RS20275	0.37	-1.0
5,005,828	+		ABI39_RS20275	0.41	-0.9
5,005,829	-		ABI39_RS20275	0.41	+1.6
5,005,829	-		ABI39_RS20275	0.41	-0.3
5,005,937	-		ABI39_RS20275	0.52	+0.6
5,006,033	-		ABI39_RS20275	0.62	-0.4
5,006,054	-		ABI39_RS20275	0.64	-0.4
5,006,074	+		ABI39_RS20275	0.67	+0.4
5,006,092	+		ABI39_RS20275	0.68	-1.0
5,006,245	-		ABI39_RS20275	0.85	-1.9
5,006,247	+		ABI39_RS20275	0.85	+0.8
5,006,322	+				+2.5
5,006,323	-				-1.6
5,006,437	+				-0.7
5,006,474	+				+1.2
5,006,534	+				+0.9
5,006,556	-				-1.0
5,006,585	+				+0.9
5,006,617	-				-2.6
5,006,648	+		ABI39_RS20280	0.12	-0.1
5,006,691	+		ABI39_RS20280	0.15	-1.4
5,006,715	+		ABI39_RS20280	0.18	+0.5
5,006,728	+		ABI39_RS20280	0.19	+0.6
5,006,728	+		ABI39_RS20280	0.19	-0.1
5,006,729	-		ABI39_RS20280	0.19	-1.6
5,006,740	+		ABI39_RS20280	0.20	+1.4
5,006,744	+		ABI39_RS20280	0.20	-0.6
5,006,848	+		ABI39_RS20280	0.29	-0.1
5,006,918	+		ABI39_RS20280	0.35	-1.9
5,006,973	-		ABI39_RS20280	0.39	-1.2
5,006,973	-		ABI39_RS20280	0.39	-0.7
5,007,080	+		ABI39_RS20280	0.48	-2.1
5,007,080	+		ABI39_RS20280	0.48	+1.7
5,007,083	-		ABI39_RS20280	0.49	-2.1
5,007,093	-		ABI39_RS20280	0.49	-0.4
5,007,096	+		ABI39_RS20280	0.50	+0.6
5,007,096	+		ABI39_RS20280	0.50	+0.2
5,007,097	-		ABI39_RS20280	0.50	+0.3
5,007,099	-		ABI39_RS20280	0.50	-0.9
5,007,102	+		ABI39_RS20280	0.50	-0.0
5,007,150	-		ABI39_RS20280	0.54	-0.7
5,007,192	-		ABI39_RS20280	0.58	-3.8
5,007,225	-		ABI39_RS20280	0.61	-1.0
5,007,227	+		ABI39_RS20280	0.61	-0.5
5,007,247	+		ABI39_RS20280	0.63	-0.2
5,007,273	+		ABI39_RS20280	0.65	-1.5
5,007,274	-		ABI39_RS20280	0.65	-2.1
5,007,274	-		ABI39_RS20280	0.65	-1.0
5,007,280	-		ABI39_RS20280	0.65	-0.9
5,007,350	+		ABI39_RS20280	0.71	+0.6
5,007,355	+		ABI39_RS20280	0.72	-1.2
5,007,357	+		ABI39_RS20280	0.72	+0.9
5,007,364	-		ABI39_RS20280	0.72	-3.4
5,007,364	-		ABI39_RS20280	0.72	+1.5