Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17315 and ABI39_RS17320 are separated by 28 nucleotides ABI39_RS17320 and ABI39_RS17325 are separated by 36 nucleotides ABI39_RS17325 and ABI39_RS17330 are separated by 75 nucleotides
ABI39_RS17315: ABI39_RS17315 - alpha amylase C-terminal domain-containing protein, at 4,376,569 to 4,378,596
_RS17315
ABI39_RS17320: ABI39_RS17320 - YhcH/YjgK/YiaL family protein, at 4,378,625 to 4,379,065
_RS17320
ABI39_RS17325: ABI39_RS17325 - DUF2461 domain-containing protein, at 4,379,102 to 4,379,767
_RS17325
ABI39_RS17330: ABI39_RS17330 - inositol monophosphatase, at 4,379,843 to 4,380,631
_RS17330
Position (kb) 4378
4379
4380 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4377.743 kb on - strand, within ABI39_RS17315 at 4377.935 kb on + strand, within ABI39_RS17315 at 4377.972 kb on + strand, within ABI39_RS17315 at 4378.020 kb on + strand, within ABI39_RS17315 at 4378.021 kb on - strand, within ABI39_RS17315 at 4378.022 kb on + strand, within ABI39_RS17315 at 4378.059 kb on + strand, within ABI39_RS17315 at 4378.071 kb on - strand, within ABI39_RS17315 at 4378.203 kb on + strand, within ABI39_RS17315 at 4378.263 kb on + strand, within ABI39_RS17315 at 4378.310 kb on - strand, within ABI39_RS17315 at 4378.316 kb on + strand, within ABI39_RS17315 at 4378.317 kb on - strand, within ABI39_RS17315 at 4378.317 kb on - strand, within ABI39_RS17315 at 4378.317 kb on - strand, within ABI39_RS17315 at 4378.323 kb on + strand, within ABI39_RS17315 at 4378.587 kb on + strand at 4378.599 kb on + strand at 4378.606 kb on - strand at 4378.612 kb on + strand at 4378.616 kb on + strand at 4378.734 kb on + strand, within ABI39_RS17320 at 4378.814 kb on - strand, within ABI39_RS17320 at 4378.850 kb on + strand, within ABI39_RS17320 at 4378.867 kb on + strand, within ABI39_RS17320 at 4378.992 kb on + strand, within ABI39_RS17320 at 4379.069 kb on + strand at 4379.219 kb on - strand, within ABI39_RS17325 at 4379.221 kb on + strand, within ABI39_RS17325 at 4379.221 kb on - strand, within ABI39_RS17325 at 4379.221 kb on - strand, within ABI39_RS17325 at 4379.230 kb on + strand, within ABI39_RS17325 at 4379.380 kb on - strand, within ABI39_RS17325 at 4379.380 kb on - strand, within ABI39_RS17325 at 4379.526 kb on - strand, within ABI39_RS17325 at 4379.549 kb on - strand, within ABI39_RS17325 at 4379.582 kb on - strand, within ABI39_RS17325 at 4379.591 kb on - strand, within ABI39_RS17325 at 4379.770 kb on + strand at 4380.042 kb on - strand, within ABI39_RS17330 at 4380.046 kb on - strand, within ABI39_RS17330
Per-strain Table
Position Strand Gene LocusTag Fraction Starch soluble; autoclaved 2.5 mg/ml (C) remove 4,377,743 - ABI39_RS17315 0.58 -0.8 4,377,935 + ABI39_RS17315 0.67 -2.9 4,377,972 + ABI39_RS17315 0.69 -1.9 4,378,020 + ABI39_RS17315 0.72 -1.6 4,378,021 - ABI39_RS17315 0.72 -1.0 4,378,022 + ABI39_RS17315 0.72 -2.7 4,378,059 + ABI39_RS17315 0.73 -2.1 4,378,071 - ABI39_RS17315 0.74 -0.5 4,378,203 + ABI39_RS17315 0.81 -0.9 4,378,263 + ABI39_RS17315 0.84 -3.7 4,378,310 - ABI39_RS17315 0.86 -3.3 4,378,316 + ABI39_RS17315 0.86 -3.3 4,378,317 - ABI39_RS17315 0.86 -2.5 4,378,317 - ABI39_RS17315 0.86 -1.5 4,378,317 - ABI39_RS17315 0.86 -0.7 4,378,323 + ABI39_RS17315 0.86 -2.6 4,378,587 + -1.8 4,378,599 + -1.1 4,378,606 - -1.2 4,378,612 + -2.2 4,378,616 + -4.2 4,378,734 + ABI39_RS17320 0.25 -3.6 4,378,814 - ABI39_RS17320 0.43 -0.8 4,378,850 + ABI39_RS17320 0.51 -2.8 4,378,867 + ABI39_RS17320 0.55 -3.2 4,378,992 + ABI39_RS17320 0.83 -2.1 4,379,069 + -1.8 4,379,219 - ABI39_RS17325 0.18 -0.1 4,379,221 + ABI39_RS17325 0.18 -2.3 4,379,221 - ABI39_RS17325 0.18 +0.1 4,379,221 - ABI39_RS17325 0.18 -0.6 4,379,230 + ABI39_RS17325 0.19 -3.1 4,379,380 - ABI39_RS17325 0.42 +0.1 4,379,380 - ABI39_RS17325 0.42 -0.4 4,379,526 - ABI39_RS17325 0.64 -1.1 4,379,549 - ABI39_RS17325 0.67 +0.5 4,379,582 - ABI39_RS17325 0.72 +1.5 4,379,591 - ABI39_RS17325 0.73 +0.8 4,379,770 + -2.7 4,380,042 - ABI39_RS17330 0.25 +0.2 4,380,046 - ABI39_RS17330 0.26 +1.3
Or see this region's nucleotide sequence