Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16315

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS16310 and ABI39_RS16315 are separated by 11 nucleotidesABI39_RS16315 and ABI39_RS16320 are separated by 4 nucleotidesABI39_RS16320 and ABI39_RS16325 overlap by 26 nucleotides ABI39_RS16310: ABI39_RS16310 - conjugative transposon protein TraJ, at 4,158,389 to 4,159,468 _RS16310 ABI39_RS16315: ABI39_RS16315 - conjugative transposon protein TraK, at 4,159,480 to 4,160,103 _RS16315 ABI39_RS16320: ABI39_RS16320 - DUF3989 domain-containing protein, at 4,160,108 to 4,160,407 _RS16320 ABI39_RS16325: ABI39_RS16325 - conjugative transposon protein TraM, at 4,160,382 to 4,161,662 _RS16325 Position (kb) 4159 4160 4161Strain fitness (log2 ratio) -3 -2 -1 0 1at 4158.780 kb on - strand, within ABI39_RS16310at 4159.155 kb on - strand, within ABI39_RS16310at 4159.182 kb on - strand, within ABI39_RS16310at 4159.204 kb on + strand, within ABI39_RS16310at 4159.204 kb on + strand, within ABI39_RS16310at 4159.451 kb on - strandat 4159.627 kb on + strand, within ABI39_RS16315at 4160.101 kb on + strandat 4160.331 kb on + strand, within ABI39_RS16320at 4160.830 kb on - strand, within ABI39_RS16325

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Per-strain Table

Position Strand Gene LocusTag Fraction Starch soluble; autoclaved 2.5 mg/ml (C)
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4,158,780 - ABI39_RS16310 0.36 -1.4
4,159,155 - ABI39_RS16310 0.71 +0.5
4,159,182 - ABI39_RS16310 0.73 -2.1
4,159,204 + ABI39_RS16310 0.75 -3.1
4,159,204 + ABI39_RS16310 0.75 -1.3
4,159,451 - +0.2
4,159,627 + ABI39_RS16315 0.24 -3.0
4,160,101 + -1.7
4,160,331 + ABI39_RS16320 0.74 -1.9
4,160,830 - ABI39_RS16325 0.35 -0.4

Or see this region's nucleotide sequence