Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07005

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS07000 and ABI39_RS07005 are separated by 66 nucleotidesABI39_RS07005 and ABI39_RS07010 are separated by 32 nucleotides ABI39_RS07000: ABI39_RS07000 - site-specific tyrosine recombinase XerD, at 1,937,803 to 1,938,729 _RS07000 ABI39_RS07005: ABI39_RS07005 - type II 3-dehydroquinate dehydratase, at 1,938,796 to 1,939,218 _RS07005 ABI39_RS07010: ABI39_RS07010 - pyruvate kinase, at 1,939,251 to 1,940,714 _RS07010 Position (kb) 1938 1939 1940Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1937.804 kb on + strandat 1937.879 kb on - strandat 1937.925 kb on + strand, within ABI39_RS07000at 1937.926 kb on - strand, within ABI39_RS07000at 1938.362 kb on - strand, within ABI39_RS07000at 1938.601 kb on - strand, within ABI39_RS07000at 1938.601 kb on - strand, within ABI39_RS07000at 1938.605 kb on + strand, within ABI39_RS07000at 1938.681 kb on - strandat 1938.823 kb on - strandat 1938.907 kb on + strand, within ABI39_RS07005at 1938.929 kb on - strand, within ABI39_RS07005at 1938.931 kb on + strand, within ABI39_RS07005at 1938.963 kb on + strand, within ABI39_RS07005at 1939.097 kb on + strand, within ABI39_RS07005at 1939.568 kb on - strand, within ABI39_RS07010at 1939.776 kb on - strand, within ABI39_RS07010at 1940.097 kb on - strand, within ABI39_RS07010at 1940.200 kb on - strand, within ABI39_RS07010

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Per-strain Table

Position Strand Gene LocusTag Fraction Starch soluble; autoclaved 2.5 mg/ml (C)
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1,937,804 + -2.3
1,937,879 - -0.5
1,937,925 + ABI39_RS07000 0.13 +3.7
1,937,926 - ABI39_RS07000 0.13 -2.3
1,938,362 - ABI39_RS07000 0.60 -1.8
1,938,601 - ABI39_RS07000 0.86 -1.8
1,938,601 - ABI39_RS07000 0.86 -2.0
1,938,605 + ABI39_RS07000 0.87 +0.4
1,938,681 - -1.6
1,938,823 - -0.4
1,938,907 + ABI39_RS07005 0.26 -4.0
1,938,929 - ABI39_RS07005 0.31 -0.4
1,938,931 + ABI39_RS07005 0.32 -4.9
1,938,963 + ABI39_RS07005 0.39 -5.6
1,939,097 + ABI39_RS07005 0.71 -5.3
1,939,568 - ABI39_RS07010 0.22 -1.3
1,939,776 - ABI39_RS07010 0.36 -0.4
1,940,097 - ABI39_RS07010 0.58 +1.2
1,940,200 - ABI39_RS07010 0.65 -0.4

Or see this region's nucleotide sequence