Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05780

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
1,599,954	-				+0.6
1,599,980	-				+0.9
1,600,011	-				-0.5
1,600,026	+				+1.6
1,600,026	+				-1.0
1,600,407	-		ABI39_RS05775	0.40	-3.2
1,600,429	-		ABI39_RS05775	0.43	+0.3
1,600,454	-		ABI39_RS05775	0.46	-1.9
1,600,514	+		ABI39_RS05775	0.54	-0.1
1,600,514	+		ABI39_RS05775	0.54	-0.2
1,600,515	-		ABI39_RS05775	0.54	-2.7
1,600,515	-		ABI39_RS05775	0.54	-0.7
1,600,518	-		ABI39_RS05775	0.54	+0.2
1,600,520	+		ABI39_RS05775	0.54	+0.0
1,600,521	-		ABI39_RS05775	0.54	-1.1
1,600,521	-		ABI39_RS05775	0.54	-1.6
1,600,521	-		ABI39_RS05775	0.54	-0.8
1,600,521	-		ABI39_RS05775	0.54	-0.4
1,600,583	+		ABI39_RS05775	0.62	-0.9
1,600,602	-		ABI39_RS05775	0.65	-0.3
1,600,603	+		ABI39_RS05775	0.65	+0.7
1,600,646	+		ABI39_RS05775	0.71	+0.2
1,600,646	+		ABI39_RS05775	0.71	+0.2
1,600,662	-		ABI39_RS05775	0.73	-0.7
1,600,665	+		ABI39_RS05775	0.73	-0.6
1,600,666	-		ABI39_RS05775	0.73	-0.3
1,600,708	+		ABI39_RS05775	0.79	-0.1
1,600,709	-		ABI39_RS05775	0.79	-0.5
1,600,736	-		ABI39_RS05775	0.82	-0.6
1,600,825	+				-1.4
1,600,873	-				+0.1
1,600,907	+				-0.0
1,600,912	+				-0.2
1,600,917	+				-0.1
1,600,935	-				+0.8
1,600,935	-				-0.8
1,600,964	-				-0.9
1,600,964	-				-0.9
1,601,197	+		ABI39_RS05780	0.36	+0.1
1,601,200	-		ABI39_RS05780	0.36	-0.8
1,601,300	+		ABI39_RS05780	0.51	-2.0
1,601,301	-		ABI39_RS05780	0.51	-1.0
1,601,301	-		ABI39_RS05780	0.51	-2.3
1,601,301	-		ABI39_RS05780	0.51	-1.7
1,601,344	-		ABI39_RS05780	0.57	-1.1
1,601,347	+		ABI39_RS05780	0.57	-0.3
1,601,357	+		ABI39_RS05780	0.59	-1.3
1,601,357	+		ABI39_RS05780	0.59	-2.9
1,601,362	+		ABI39_RS05780	0.60	-1.5
1,601,440	+		ABI39_RS05780	0.71	-3.0
1,601,468	+		ABI39_RS05780	0.75	-0.6
1,601,492	-		ABI39_RS05780	0.78	-0.9
1,601,492	-		ABI39_RS05780	0.78	-1.7
1,601,492	-		ABI39_RS05780	0.78	-0.9
1,601,572	+		ABI39_RS05780	0.90	-0.4
1,601,668	-				-0.1
1,601,676	-				-1.2
1,601,751	-				-2.9
1,601,756	-				-2.6
1,601,875	+		ABI39_RS05785	0.18	-0.7
1,601,896	-		ABI39_RS05785	0.19	-0.4
1,601,955	+		ABI39_RS05785	0.24	-1.5
1,602,150	+		ABI39_RS05785	0.39	-0.7
1,602,154	+		ABI39_RS05785	0.39	-1.1
1,602,155	-		ABI39_RS05785	0.39	-1.2
1,602,377	-		ABI39_RS05785	0.56	-0.0
1,602,377	-		ABI39_RS05785	0.56	-2.0
1,602,381	+		ABI39_RS05785	0.56	-0.7
1,602,382	-		ABI39_RS05785	0.56	-1.7
1,602,543	+		ABI39_RS05785	0.69	-2.8
1,602,543	+		ABI39_RS05785	0.69	-1.3
1,602,604	-		ABI39_RS05785	0.73	-0.7
1,602,612	+		ABI39_RS05785	0.74	-0.5